RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 AKR1B15C9JRZ8 316 aaPredicted RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 ARHGAP6O43182 974 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 CALUO43852 315 aaPredicted RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 DCLK2Q8N568 766 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 CDKL2Q92772 493 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.72□□□□□ -0.53
RTN3-206ENST00000377819 OPTNQ96CV9 577 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 KRT12Q99456 494 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 TACO1Q9BSH4 297 aaKnown RBP11.72□□□□□ -0.53
RTN3-206ENST00000377819 EPS15L1Q9UBC2 864 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ATAD2Q6PL18 1390 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 EXOC3O60645 756 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 CASP2P42575 452 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ARHGDIAP52565 204 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 TCIRG1Q13488 830 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 KIF22Q14807 665 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ASIC2Q16515 512 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ACRBPQ8NEB7 543 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 ARHGEF10LQ9HCE6 1279 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 CCPG1Q9ULG6 757 aa11.72□□□□□ -0.53
RTN3-206ENST00000377819 NFKBIAP25963 317 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 MAGEA1P43355 309 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 HADHQ16836 314 aaKnown RBP11.71□□□□□ -0.53
RTN3-206ENST00000377819 HP1BP3Q5SSJ5 553 aaPredicted RBP11.71□□□□□ -0.53
RTN3-206ENST00000377819 CNNM4Q6P4Q7 775 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 TRIM42Q8IWZ5 723 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 NRBF2Q96F24 287 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 NUP58Q9BVL2 599 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 DNAJC25Q9H1X3 360 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 PARP3Q9Y6F1 533 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 FHOD3Q2V2M9 1422 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 RNASE9P60153 205 aaKnown RBP11.71□□□□□ -0.53
RTN3-206ENST00000377819 ALDH1L2Q3SY69 923 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 GARSP41250 739 aaKnown RBP11.71□□□□□ -0.53
RTN3-206ENST00000377819 ANKRD20A4Q4UJ75 823 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 ANKRD20A8PQ5CZ79 823 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 ANKRD20A2Q5SQ80 823 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 ANKRD20A1Q5TYW2 823 aa11.71□□□□□ -0.53
RTN3-206ENST00000377819 KDM5DQ9BY66 1539 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 MAGEB6P1A0A0J9YX57 407 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 SERPINI2O75830 405 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 ZRANB2O95218 330 aaKnown RBP eCLIP11.71□□□□□ -0.54
RTN3-206ENST00000377819 PPP2R5EQ16537 467 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 PDXDC1Q6P996 788 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 SYT10Q6XYQ8 523 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 ARMC9Q7Z3E5 817 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 IWS1Q96ST2 819 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 ADPGKQ9BRR6 497 aa11.71□□□□□ -0.54
RTN3-206ENST00000377819 SERPINB6P35237 376 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 SMCR8Q8TEV9 937 aaPredicted RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 NAPGQ99747 312 aaPredicted RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 NYXQ9GZU5 481 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 RAB17Q9H0T7 212 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 TTF2Q9UNY4 1162 aaKnown RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 NPHP3Q7Z494 1330 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 ZCCHC11Q5TAX3 1644 aaKnown RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 RGS16O15492 202 aaPredicted RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 HEXIM1O94992 359 aaKnown RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 PPP2R5AQ15172 486 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 LETM2Q2VYF4 491 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 DENND2CQ68D51 928 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 TEX12Q9BXU0 123 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 HELLSQ9NRZ9 838 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 SLC8A2Q9UPR5 921 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 RTL1A6NKG5 1358 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 KDM6BO15054 1643 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 ABCA9Q8IUA7 1624 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 F6X3S4 739 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 EVI5O60447 810 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 SNRPA1P09661 255 aaKnown RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 PARP1P09874 1014 aaKnown RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 OLA1Q9NTK5 396 aaKnown RBP11.7□□□□□ -0.54
RTN3-206ENST00000377819 MAP3K7O43318 606 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 PDE4DQ08499 809 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 RPS6KA1Q15418 735 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 ANKRD13DQ6ZTN6 518 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 EFCAB13Q8IY85 973 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 TMCO5AQ8N6Q1 288 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 TSKSQ9UJT2 592 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 DAAM1Q9Y4D1 1078 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.7□□□□□ -0.54
RTN3-206ENST00000377819 SBNO2Q9Y2G9 1366 aa11.7□□□□□ -0.54
RTN3-206ENST00000377819 ADGRL2O95490 1459 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 ATF7P17544 494 aaPredicted RBP11.69□□□□□ -0.54
RTN3-206ENST00000377819 KRT81Q14533 505 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 ELMSAN1Q6PJG2 1045 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 POTEB3A0JP26 581 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 LDHBP07195 334 aaKnown RBP11.69□□□□□ -0.54
RTN3-206ENST00000377819 SKOR1P84550 965 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 MYL5Q02045 173 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 AP1ARQ63HQ0 302 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 C1orf228Q6PIY5 440 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 POTEBQ6S5H4 581 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 NSMFQ6X4W1 530 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 RSRC2Q7L4I2 434 aaKnown RBP11.69□□□□□ -0.54
RTN3-206ENST00000377819 CHST3Q7LGC8 479 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 PEX26Q7Z412 305 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 CCDC84Q86UT8 332 aaPredicted RBP11.69□□□□□ -0.54
RTN3-206ENST00000377819 GLG1Q92896 1179 aa11.69□□□□□ -0.54
RTN3-206ENST00000377819 RPS6KC1Q96S38 1066 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms