RNA–Protein interactions for RNA: ENST00000376709.8

VSX1-202, Transcript of visual system homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VSX1, Length 2,192 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-202ENST00000376709 GRIK5Q16478 980 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 COL23A1Q86Y22 540 aaPredicted RBP23.23■■□□□ 1.31
VSX1-202ENST00000376709 PHF20Q9BVI0 1012 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 SPTLC3Q9NUV7 552 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 BBOX1O75936 387 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 ATP2B4P23634 1241 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 SPECC1Q5M775 1068 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 C12orf60Q5U649 245 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 CNNM3Q8NE01 707 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 BRMS1Q9HCU9 246 aa23.23■■□□□ 1.31
VSX1-202ENST00000376709 PTPREP23469 700 aa23.22■■□□□ 1.31
VSX1-202ENST00000376709 SHISA4Q96DD7 197 aa23.22■■□□□ 1.31
VSX1-202ENST00000376709 FAM13BQ9NYF5 915 aa23.22■■□□□ 1.31
VSX1-202ENST00000376709 MKRN1Q9UHC7 482 aaKnown RBP23.22■■□□□ 1.31
VSX1-202ENST00000376709 FBXO2Q9UK22 296 aaPredicted RBP23.22■■□□□ 1.31
VSX1-202ENST00000376709 KLRG2A4D1S0 409 aaPredicted RBP23.21■■□□□ 1.31
VSX1-202ENST00000376709 LDHCP07864 332 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 PNOCQ13519 176 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 LONRF3Q496Y0 759 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 ISM2Q6H9L7 571 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 CNTNAP5Q8WYK1 1306 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 KRBA2Q6ZNG9 492 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 CRAMP1Q96RY5 1269 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 CD209Q9NNX6 404 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 TUBE1Q9UJT0 475 aa23.21■■□□□ 1.31
VSX1-202ENST00000376709 TPM4P67936 248 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 TFAP4Q01664 338 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 SRBD1Q8N5C6 995 aaKnown RBP23.2■■□□□ 1.3
VSX1-202ENST00000376709 TGFBRAP1Q8WUH2 860 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 KAT14Q9H8E8 782 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 MKNK2Q9HBH9 465 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 POLLQ9UGP5 575 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 HMGB2P26583 209 aaKnown RBP23.2■■□□□ 1.3
VSX1-202ENST00000376709 LRMPQ12912 555 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 DYNLL2Q96FJ2 89 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 HOOK1Q9UJC3 728 aaKnown RBP23.2■■□□□ 1.3
VSX1-202ENST00000376709 NAV1Q8NEY1 1877 aa23.2■■□□□ 1.3
VSX1-202ENST00000376709 UQCRHLA0A096LP55 91 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 TRIM75PA6NK02 468 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 UQCRHP07919 91 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 KIF5BP33176 963 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 PPP4CP60510 307 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 GRIN1Q05586 938 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 CCDC144BQ3MJ40 725 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 METTL16Q86W50 562 aaKnown RBP23.19■■□□□ 1.3
VSX1-202ENST00000376709 TBC1D16Q8TBP0 767 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 BAZ2BQ9UIF8 2168 aaKnown RBP23.19■■□□□ 1.3
VSX1-202ENST00000376709 ANKRD31Q8N7Z5 1873 aa23.19■■□□□ 1.3
VSX1-202ENST00000376709 FAM205CA6NFA0 338 aa23.18■■□□□ 1.3
VSX1-202ENST00000376709 PPEF1O14829 653 aaPredicted RBP23.18■■□□□ 1.3
VSX1-202ENST00000376709 RCSD1Q6JBY9 416 aa23.18■■□□□ 1.3
VSX1-202ENST00000376709 NLGN1Q8N2Q7 840 aa23.18■■□□□ 1.3
VSX1-202ENST00000376709 PODXL2Q9NZ53 605 aa23.18■■□□□ 1.3
VSX1-202ENST00000376709 SRPRBQ9Y5M8 271 aaKnown RBP23.18■■□□□ 1.3
VSX1-202ENST00000376709 SMTNL1A8MU46 457 aa23.18■■□□□ 1.3
VSX1-202ENST00000376709 NT5C2P49902 561 aa23.18■■□□□ 1.3
VSX1-202ENST00000376709 ZNF579Q8NAF0 562 aaKnown RBP23.18■■□□□ 1.3
VSX1-202ENST00000376709 ROBO3Q96MS0 1386 aa23.17■■□□□ 1.3
VSX1-202ENST00000376709 C6orf229H3BNL8 230 aa23.17■■□□□ 1.3
VSX1-202ENST00000376709 POLR2DO15514 142 aaKnown RBP23.17■■□□□ 1.3
VSX1-202ENST00000376709 IL1R1P14778 569 aa23.17■■□□□ 1.3
VSX1-202ENST00000376709 DGKHQ86XP1 1220 aa23.17■■□□□ 1.3
VSX1-202ENST00000376709 CERS3Q8IU89 383 aa23.17■■□□□ 1.3
VSX1-202ENST00000376709 MAPKAPK5Q8IW41 473 aa23.17■■□□□ 1.3
VSX1-202ENST00000376709 RTFDC1Q9BY42 306 aaPredicted RBP23.17■■□□□ 1.3
VSX1-202ENST00000376709 TSPY3P0CV98 308 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 TSPY8P0CW00 308 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 SCG2P13521 617 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 RXRBP28702 533 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 BTDP43251 543 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 EARS2Q5JPH6 523 aaKnown RBP23.16■■□□□ 1.3
VSX1-202ENST00000376709 CACTINQ8WUQ7 758 aaKnown RBP23.16■■□□□ 1.3
VSX1-202ENST00000376709 IL17RBQ9NRM6 502 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 ZNF444Q8N0Y2 327 aaPredicted RBP23.16■■□□□ 1.3
VSX1-202ENST00000376709 PNMA1Q8ND90 353 aa23.16■■□□□ 1.3
VSX1-202ENST00000376709 SAP30BPQ9UHR5 308 aaKnown RBP23.16■■□□□ 1.3
VSX1-202ENST00000376709 LRRC37AA6NMS7 1700 aa23.15■■□□□ 1.3
VSX1-202ENST00000376709 OLFM4Q6UX06 510 aa23.15■■□□□ 1.3
VSX1-202ENST00000376709 FILIP1Q7Z7B0 1213 aa23.15■■□□□ 1.3
VSX1-202ENST00000376709 ELOA2Q8IYF1 753 aaPredicted RBP23.15■■□□□ 1.3
VSX1-202ENST00000376709 CSRNP2Q9H175 543 aa23.15■■□□□ 1.3
VSX1-202ENST00000376709 PCDHA5Q9Y5H7 936 aa23.15■■□□□ 1.3
VSX1-202ENST00000376709 IKBKBO14920 756 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 SMC2O95347 1197 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 MMP10P09238 476 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 NLRP5P59047 1200 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 PFKFB3Q16875 520 aaPredicted RBP23.14■■□□□ 1.3
VSX1-202ENST00000376709 CCDC178Q5BJE1 867 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 MFSD14BQ5SR56 506 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 MSL1Q68DK7 614 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 LTBP1Q14766 1721 aa23.14■■□□□ 1.3
VSX1-202ENST00000376709 BMP15O95972 392 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 PLCD1P51178 756 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 NCAPHQ15003 741 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 POSTNQ15063 836 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 PDILTQ8N807 584 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 NRXN2Q9P2S2 1712 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 CDK5RAP2Q96SN8 1893 aa23.14■■□□□ 1.29
VSX1-202ENST00000376709 USP17L3A6NCW0 530 aa23.13■■□□□ 1.29
VSX1-202ENST00000376709 USP17L4A6NCW7 530 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms