RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 ASIC2Q16515 512 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 SFMBT2Q5VUG0 894 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 POLKQ9UBT6 870 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 DNA2P51530 1060 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 BIRC3Q13489 604 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 ICE2Q659A1 982 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 FGFR1OP2Q9NVK5 253 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 ATP10BO94823 1461 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 CHUKO15111 745 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 HSPA8P11142 646 aaKnown RBP11.28□□□□□ -0.6
PTCH1-204ENST00000375290 KRT71Q3SY84 523 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 SPATA1Q5VX52 437 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 CTTNBP2NLQ9P2B4 639 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 ERBB4Q15303 1308 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 HPDP32754 393 aaPredicted RBP11.28□□□□□ -0.6
PTCH1-204ENST00000375290 NR1H3Q13133 447 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 MAPK8IP2Q13387 824 aaPredicted RBP11.28□□□□□ -0.6
PTCH1-204ENST00000375290 SDCCAG8Q86SQ7 713 aaPredicted RBP11.28□□□□□ -0.6
PTCH1-204ENST00000375290 NYXQ9GZU5 481 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 PFDN4Q9NQP4 134 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 SEC24BO95487 1268 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 HAUS1Q96CS2 278 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 TRIM11Q96F44 468 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 SH2D4AQ9H788 454 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 CEP170Q5SW79 1584 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 ZNF521Q96K83 1311 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 PLEKHG1Q9ULL1 1385 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 AMFRQ9UKV5 643 aa11.28□□□□□ -0.6
PTCH1-204ENST00000375290 DYNC1I2Q13409 638 aaKnown RBP11.27□□□□□ -0.6
PTCH1-204ENST00000375290 KARSQ15046 597 aaKnown RBP11.27□□□□□ -0.6
PTCH1-204ENST00000375290 DDX21Q9NR30 783 aaKnown RBP eCLIP11.27□□□□□ -0.6
PTCH1-204ENST00000375290 ATP7AQ04656 1500 aa11.27□□□□□ -0.6
PTCH1-204ENST00000375290 LMNB1P20700 586 aa11.27□□□□□ -0.6
PTCH1-204ENST00000375290 ZSCAN29Q8IWY8 852 aaPredicted RBP11.27□□□□□ -0.6
PTCH1-204ENST00000375290 CCDC197Q8NCU1 140 aa11.27□□□□□ -0.6
PTCH1-204ENST00000375290 PPP1R13BQ96KQ4 1090 aa11.27□□□□□ -0.6
PTCH1-204ENST00000375290 MRGBPQ9NV56 204 aa11.27□□□□□ -0.6
PTCH1-204ENST00000375290 TRIM4Q9C037 500 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 CHPF2Q9P2E5 772 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 ANKIB1Q9P2G1 1089 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 HMGB3O15347 200 aaKnown RBP11.27□□□□□ -0.61
PTCH1-204ENST00000375290 ATP5JP18859 108 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 PNMA8AQ86V59 439 aaPredicted RBP11.27□□□□□ -0.61
PTCH1-204ENST00000375290 SLC4A4Q9Y6R1 1079 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 YTHDC2Q9H6S0 1430 aaKnown RBP11.27□□□□□ -0.61
PTCH1-204ENST00000375290 FAM13AO94988 1023 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 PEX26Q7Z412 305 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 MICAL1Q8TDZ2 1067 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 ANO9A1A5B4 782 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 TTLL7Q6ZT98 887 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 C8orf58Q8NAV2 365 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 PHF8Q9UPP1 1060 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 ZWINTO95229 277 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 RASEFQ8IZ41 740 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 STX2P32856 288 aa11.27□□□□□ -0.61
PTCH1-204ENST00000375290 LONRF2Q1L5Z9 754 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 ZNF189O75820 626 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 LONP1P36776 959 aaKnown RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 WAPLQ7Z5K2 1190 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 DCAF5Q96JK2 942 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 CCDC68Q9H2F9 335 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 YWHAEP62258 255 aaKnown RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 CCDC63Q8NA47 563 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 SSH3Q8TE77 659 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 MAGEA1P43355 309 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 HHATQ5VTY9 493 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 FBXO18Q8NFZ0 1043 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 FAM204AQ9H8W3 233 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 STX8Q9UNK0 236 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 GNGT1P63211 74 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 RAPGEF1Q13905 1077 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 DENND2AQ9ULE3 1009 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 ODF2LQ9ULJ1 636 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 H0YCG3 227 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 WDR44Q5JSH3 913 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 GPR108Q9NPR9 543 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 DAAM1Q9Y4D1 1078 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 FAM169AQ9Y6X4 670 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 MORC2Q9Y6X9 1032 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 PASKQ96RG2 1323 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 EIF3DO15371 548 aaKnown RBP eCLIP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 IL9RQ01113 521 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 MAK16Q9BXY0 300 aaKnown RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 CROCC2H7BZ55 1655 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 CPSF1Q10570 1443 aaKnown RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 RCAN1P53805 252 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 PIP4K2CQ8TBX8 421 aa11.26□□□□□ -0.61
PTCH1-204ENST00000375290 EIF2AQ9BY44 585 aaKnown RBP11.26□□□□□ -0.61
PTCH1-204ENST00000375290 ARHGEF2Q92974 986 aaKnown RBP11.25□□□□□ -0.61
PTCH1-204ENST00000375290 PSD3Q9NYI0 1048 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 SIRT1Q96EB6 747 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 PBKQ96KB5 322 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 SCOCQ9UIL1 159 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 MAGEB6P1A0A0J9YX57 407 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 ZNF804AQ7Z570 1209 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 STAG1Q8WVM7 1258 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 ACEP12821 1306 aa11.25□□□□□ -0.61
PTCH1-204ENST00000375290 TARSL2A2RTX5 802 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms