RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 ZBTB16Q05516 673 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 KCNJ12Q14500 433 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 CLEC17AQ6ZS10 378 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 DNAI2Q9GZS0 605 aa12.87□□□□□ -0.35
PTCH1-203ENST00000375274 CARMIL3Q8ND23 1372 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 CEP104O60308 925 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 CABP7Q86V35 215 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 LINC00301Q8NCQ3 95 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 ATP7BP35670 1465 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 ACTN4O43707 911 aaKnown RBP12.86□□□□□ -0.35
PTCH1-203ENST00000375274 VIMP08670 466 aaKnown RBP12.86□□□□□ -0.35
PTCH1-203ENST00000375274 PPARAQ07869 468 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 NBPF14Q5TI25 921 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 TYW1BQ6NUM6 668 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 C2CD5Q86YS7 1000 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 ZNF622Q969S3 477 aaKnown RBP eCLIP12.86□□□□□ -0.35
PTCH1-203ENST00000375274 SAP30BPQ9UHR5 308 aaKnown RBP12.86□□□□□ -0.35
PTCH1-203ENST00000375274 KLHL30Q0D2K2 578 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 ASIC2Q16515 512 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 CCDC50Q8IVM0 306 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 PHKG2P15735 406 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 LTKP29376 864 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 DNM2P50570 870 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 RRAGAQ7L523 313 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 KLHL7Q8IXQ5 586 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 TRIM58Q8NG06 486 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 CABS1Q96KC9 395 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 GPCPD1Q9NPB8 672 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 TSKSQ9UJT2 592 aa12.86□□□□□ -0.35
PTCH1-203ENST00000375274 MORC3Q14149 939 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 SEL1L2Q5TEA6 688 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 WDR78Q5VTH9 848 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 IMPG2Q9BZV3 1241 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 NLRC4Q9NPP4 1024 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 USP17L12C9JPN9 530 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 USP17L21D6R901 530 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 HAUS3Q68CZ6 603 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 TRIM31Q9BZY9 425 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 SYNCQ9H7C4 482 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 SPTLC3Q9NUV7 552 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 DDX41Q9UJV9 622 aaKnown RBP12.85□□□□□ -0.35
PTCH1-203ENST00000375274 CDC23Q9UJX2 597 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 FRMD4BQ9Y2L6 1034 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 TNKSO95271 1327 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 H7C1D1 291 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 STAMBPO95630 424 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 TFAP4Q01664 338 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 POLA2Q14181 598 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 APOA5Q6Q788 366 aa12.85□□□□□ -0.35
PTCH1-203ENST00000375274 TNFAIP3P21580 790 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 IRX3P78415 501 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 RESTQ13127 1097 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 PLS1Q14651 629 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 RPS6KA1Q15418 735 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 IQCDQ96DY2 449 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 RTCBQ9Y3I0 505 aaKnown RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 EPN1Q9Y6I3 576 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 SPOPO43791 374 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 PPP6R2O75170 966 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 ARHGAP25P42331 645 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 UTP11Q9Y3A2 253 aaKnown RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 SF3B2Q13435 895 aaKnown RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 TCHPQ9BT92 498 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 GPR108Q9NPR9 543 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 ZDHHC9Q9Y397 364 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 MAST3O60307 1309 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 FLOT1O75955 427 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 ERCC5P28715 1186 aaPredicted RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 SETDB1Q15047 1291 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 SRGAP1Q7Z6B7 1085 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 NUCKS1Q9H1E3 243 aaKnown RBP12.84□□□□□ -0.35
PTCH1-203ENST00000375274 METP08581 1390 aa12.84□□□□□ -0.35
PTCH1-203ENST00000375274 ATP8B1O43520 1251 aa12.83□□□□□ -0.35
PTCH1-203ENST00000375274 SASH1O94885 1247 aa12.83□□□□□ -0.35
PTCH1-203ENST00000375274 FAM47AQ5JRC9 791 aa12.83□□□□□ -0.35
PTCH1-203ENST00000375274 NKIRAS1Q9NYS0 192 aa12.83□□□□□ -0.35
PTCH1-203ENST00000375274 ABCA8O94911 1581 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 CTSWP56202 376 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 MXRA7P84157 204 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 UBE3CQ15386 1083 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 REXO1Q8N1G1 1221 aaKnown RBP12.83□□□□□ -0.36
PTCH1-203ENST00000375274 MED4Q9NPJ6 270 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 CPSF1Q10570 1443 aaKnown RBP12.83□□□□□ -0.36
PTCH1-203ENST00000375274 EIF6P56537 245 aaKnown RBP12.83□□□□□ -0.36
PTCH1-203ENST00000375274 MAP3K9P80192 1104 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 KIF23Q02241 960 aaPredicted RBP12.83□□□□□ -0.36
PTCH1-203ENST00000375274 SFMBT2Q5VUG0 894 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 DAAM2Q86T65 1068 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 WDR66Q8TBY9 1149 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 GSDMAQ96QA5 445 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 KIF2CQ99661 725 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 PUS3Q9BZE2 481 aaKnown RBP12.83□□□□□ -0.36
PTCH1-203ENST00000375274 SWAP70Q9UH65 585 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 GTPBP6O43824 516 aaPredicted RBP12.83□□□□□ -0.36
PTCH1-203ENST00000375274 CASP14P31944 242 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 PTGDRQ13258 359 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 CALCRLQ16602 461 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 NELFCDQ8IXH7 590 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 FERMT1Q9BQL6 677 aa12.83□□□□□ -0.36
PTCH1-203ENST00000375274 LZTS2Q9BRK4 669 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms