RNA–Protein interactions for RNA: ENST00000367251.7

SYNE1-205, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,837 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-205ENST00000367251 MNAT1P51948 309 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 CALCOCO2Q13137 446 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 POLA2Q14181 598 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 CCDC14Q49A88 953 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 ZMYM1Q5SVZ6 1142 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 TRAPPC3LQ5T215 181 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 NT5C3AQ9H0P0 336 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 EXOC7Q9UPT5 735 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 KDM3AQ9Y4C1 1321 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 ACTN4O43707 911 aaKnown RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 APBB1IPQ7Z5R6 666 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 PRKAG2Q9UGJ0 569 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 METP08581 1390 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 BACH1O14867 736 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 ATP8B1O43520 1251 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 A1BGP04217 495 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 LRRC8AQ8IWT6 810 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 ATP10DQ9P241 1426 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 IKBKBO14920 756 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 CTDSPL2Q05D32 466 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 MTMR3Q13615 1198 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 ZNF654Q8IZM8 581 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 PROCA1Q8NCQ7 364 aaPredicted RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 IQCGQ9H095 443 aaKnown RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 POLR3EQ9NVU0 708 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 LRWD1Q9UFC0 647 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 MKRN1Q9UHC7 482 aaKnown RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 NSFL1CQ9UNZ2 370 aaKnown RBP10.03□□□□□ -0.8
SYNE1-205ENST00000367251 A2ML1A8K2U0 1454 aa10.03□□□□□ -0.8
SYNE1-205ENST00000367251 EFCAB8A8MWE9 144 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 STK25O00506 426 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 NR1I2O75469 434 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 ELF2Q15723 593 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 TTC31Q49AM3 519 aaPredicted RBP10.02□□□□□ -0.8
SYNE1-205ENST00000367251 KRBA2Q6ZNG9 492 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 USP28Q96RU2 1077 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 ORAI2Q96SN7 254 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 SAMD15Q9P1V8 674 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 KRT9P35527 623 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 PSMC4P43686 418 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 RUFY4Q6ZNE9 571 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 CABP7Q86V35 215 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 POTEDQ86YR6 584 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 CNBD1Q8NA66 436 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 BTG4Q9NY30 223 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 GGA1Q9UJY5 639 aa10.02□□□□□ -0.8
SYNE1-205ENST00000367251 PDIA3P30101 505 aaKnown RBP10.02□□□□□ -0.81
SYNE1-205ENST00000367251 IFNL3Q8IZI9 196 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.02□□□□□ -0.81
SYNE1-205ENST00000367251 ZSCAN10Q96SZ4 725 aaPredicted RBP10.02□□□□□ -0.81
SYNE1-205ENST00000367251 SERTAD1Q9UHV2 236 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 CEP83Q9Y592 693 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 RFX7Q2KHR2 1363 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 SEMA3EO15041 775 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 PAK2Q13177 524 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 OTUD7BQ6GQQ9 843 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 UBL4BQ8N7F7 174 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 IFT81Q8WYA0 676 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 KCNG1Q9UIX4 513 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 H7C1D1 291 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 TNFAIP3P21580 790 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 TRAPPC10P48553 1259 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 ARID5AQ03989 594 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 MTX1Q13505 466 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 PHKBQ93100 1093 aa10.02□□□□□ -0.81
SYNE1-205ENST00000367251 LAD1O00515 517 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 GTPBP6O43824 516 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 STX10O60499 249 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 EIF6P56537 245 aaKnown RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PPFIA1Q13136 1202 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 RAPGEF1Q13905 1077 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 CPLX4Q7Z7G2 160 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 CUEDC2Q9H467 287 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PICK1Q9NRD5 415 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PCDHA7Q9UN72 937 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 RNF17Q9BXT8 1623 aaKnown RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PPP2R5EQ16537 467 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 CFAP221Q4G0U5 840 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 RNF34Q969K3 372 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 RASSF4Q9H2L5 321 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 FOXP1Q9H334 677 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 ARHGEF10LQ9HCE6 1279 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 UTP11Q9Y3A2 253 aaKnown RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 GLI2P10070 1586 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 ERCC5P28715 1186 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 ARID4AP29374 1257 aaPredicted RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PNOCQ13519 176 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 GSTA5Q7RTV2 222 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 FBXO18Q8NFZ0 1043 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 BCL2L12Q9HB09 334 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PFDN4Q9NQP4 134 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 ATP6V0A2Q9Y487 856 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 LONP1P36776 959 aaKnown RBP10.01□□□□□ -0.81
SYNE1-205ENST00000367251 DNM2P50570 870 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 SMTNP53814 917 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 PRKG1Q13976 671 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 CALCRLQ16602 461 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 SPATA1Q5VX52 437 aa10.01□□□□□ -0.81
SYNE1-205ENST00000367251 FANCBQ8NB91 859 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms