RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 DNM1LO00429 736 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 CYP2C19P33261 490 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 RGS2P41220 211 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 BACE1P56817 501 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 PABPC4Q13310 644 aaKnown RBP eCLIP10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 SLC39A5Q6ZMH5 540 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 PLEKHH3Q7Z736 793 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 TRMT44Q8IYL2 757 aaKnown RBP10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 NPLOC4Q8TAT6 608 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 NECAB3Q96P71 396 aaPredicted RBP10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 OSBPL5Q9H0X9 879 aaPredicted RBP10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 PRDM5Q9NQX1 630 aaPredicted RBP10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 NCOR1O75376 2440 aa10.62□□□□□ -0.71
HMGB1P39-201ENST00000366304 MAPK4P31152 587 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 IRX3P78415 501 aaPredicted RBP10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 MAP2K5Q13163 448 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 RASGRF1Q13972 1273 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 SNX17Q15036 470 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 ANO1Q5XXA6 986 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 TMC2Q8TDI7 906 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 ADAMTS19Q8TE59 1207 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 LPAR1Q92633 364 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 PAGR1Q9BTK6 254 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 WDR18Q9BV38 432 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 USP44Q9H0E7 712 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 DNAJC18Q9H819 358 aa10.61□□□□□ -0.71
HMGB1P39-201ENST00000366304 MROH7-TTC4A0A0A0MT08 1334 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 MYH13Q9UKX3 1938 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 REV3LO60673 3130 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 GPR75-ASB3A0A0A6YYF3 556 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 MECOMQ03112 1051 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 PDE3AQ14432 1141 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 ATP2B3Q16720 1220 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 ZNF710Q8N1W2 664 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 BBXQ8WY36 941 aaPredicted RBP10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 PPM1EQ8WY54 764 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 MARVELD3Q96A59 401 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 ASB2Q96Q27 587 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 SIL1Q9H173 461 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 EMILIN3Q9NT22 766 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 PRKAG2Q9UGJ0 569 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 DENND2AQ9ULE3 1009 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 SIPA1L1O43166 1804 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 RLFQ13129 1914 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 MYH2Q9UKX2 1941 aa10.6□□□□□ -0.71
HMGB1P39-201ENST00000366304 ATAD5Q96QE3 1844 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 CYBAP13498 195 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 DNAJB2P25686 324 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 CNGA1P29973 690 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 PBX2P40425 430 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 ADGRE1Q14246 886 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 CCDC102BQ68D86 513 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 DZIP1Q86YF9 867 aaKnown RBP10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 FERMT2Q96AC1 680 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 EDC3Q96F86 508 aaKnown RBP10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 RNPC3Q96LT9 517 aaKnown RBP10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 ABCF2Q9UG63 623 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 XIRP2A4UGR9 3374 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 CACNA1FO60840 1977 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 CHD7Q9P2D1 2997 aa10.59□□□□□ -0.71
HMGB1P39-201ENST00000366304 PIEZO1Q92508 2521 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 GRXCR1A8MXD5 290 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 PTPREP23469 700 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 ADCYAP1R1P41586 468 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 TLE2Q04725 743 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 MFSD14CQ5VZR4 134 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 PI16Q6UXB8 463 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 ATXN2LQ8WWM7 1075 aaKnown RBP10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 UHRF1Q96T88 793 aaPredicted RBP10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 TBC1D2Q9BYX2 928 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 ZNF576Q9H609 170 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 BTBD7Q9P203 1132 aa10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 SALL2Q9Y467 1007 aaPredicted RBP10.58□□□□□ -0.72
HMGB1P39-201ENST00000366304 SEMA3EO15041 775 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 GDF11O95390 407 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 HOXC6P09630 235 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 GRB14Q14449 540 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 PRAMEF19Q5SWL8 479 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 TBC1D9Q6ZT07 1266 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 PRDM12Q9H4Q4 367 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 GNL3LQ9NVN8 582 aaKnown RBP10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 TMOD4Q9NZQ9 345 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 PA2G4Q9UQ80 394 aaKnown RBP10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 SYNGAP1Q96PV0 1343 aa10.57□□□□□ -0.72
HMGB1P39-201ENST00000366304 SLC15A5A6NIM6 579 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 TIMM10P62072 90 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 ATP2B2Q01814 1243 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 LRRC41Q15345 812 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 CCDC85BQ15834 202 aaPredicted RBP10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 C16orf59Q7L2K0 433 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 SH3RF3Q8TEJ3 882 aaPredicted RBP10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 NSUN4Q96CB9 384 aaKnown RBP10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 AS3MTQ9HBK9 375 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 THEGQ9P2T0 379 aa10.56□□□□□ -0.72
HMGB1P39-201ENST00000366304 USP17L10C9JJH3 530 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 KIAA0355O15063 1070 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 MSCO60682 206 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 COBLO75128 1261 aa10.55□□□□□ -0.72
HMGB1P39-201ENST00000366304 CIAO1O76071 339 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms