RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 VPS37CA5D8V6 355 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-201ENST00000360718 CPLX1O14810 134 aa15.27■□□□□ 0.04
SQSTM1-201ENST00000360718 DLGAP5Q15398 846 aa15.27■□□□□ 0.04
SQSTM1-201ENST00000360718 ZBED3Q96IU2 234 aaPredicted RBP15.27■□□□□ 0.04
SQSTM1-201ENST00000360718 IL17RBQ9NRM6 502 aa15.27■□□□□ 0.04
SQSTM1-201ENST00000360718 GJA3Q9Y6H8 435 aa15.27■□□□□ 0.04
SQSTM1-201ENST00000360718 LMNB1P20700 586 aa15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 GMPSP49915 693 aaPredicted RBP15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 METAP2P50579 478 aaKnown RBP eCLIP15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 TFAP4Q01664 338 aa15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 DNM1Q05193 864 aaKnown RBP15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 CPLX2Q6PUV4 134 aaKnown RBP15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 NSUN7Q8NE18 718 aaKnown RBP15.27■□□□□ 0.03
SQSTM1-201ENST00000360718 HLA-DOAP06340 250 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 KRT85P78386 507 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 NBPF9Q3BBW0 867 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 CCDC178Q5BJE1 867 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 CCDC144CPQ8IYA2 1237 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 PDCL3Q9H2J4 239 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 DNAJC18Q9H819 358 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 TMOD2Q9NZR1 351 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 ZNF70Q9UC06 446 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 FAM196BA6NMK8 535 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 WNT10BO00744 389 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 CDC27P30260 824 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 EIF6P56537 245 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 IFIT1BQ5T764 474 aaKnown RBP15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 RCSD1Q6JBY9 416 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 MICU3Q86XE3 530 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 MTMR14Q8NCE2 650 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 MYOZ2Q9NPC6 264 aa15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 FAM217BQ9NTX9 383 aaPredicted RBP15.26■□□□□ 0.03
SQSTM1-201ENST00000360718 TCP10L2B9ZVM9 353 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 CDKL5O76039 1030 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 ADCY5O95622 1261 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 TSPY3P0CV98 308 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 TSPY8P0CW00 308 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 MMP14P50281 582 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 ZNF280AP59817 542 aaPredicted RBP15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 SPDYE2Q495Y8 402 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 SMARCC2Q8TAQ2 1214 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 USP25Q9UHP3 1055 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.25■□□□□ 0.031e-7■■■■□ 21.5
SQSTM1-201ENST00000360718 CNTNAP1P78357 1384 aa15.25■□□□□ 0.03
SQSTM1-201ENST00000360718 PTPDC1A2A3K4 754 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 GOLGA8AA7E2F4 631 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 NPM3O75607 178 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 ADD1P35611 737 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 RCAN1P53805 252 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 SASS6Q6UVJ0 657 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 MICALL2Q8IY33 904 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 DDX11Q96FC9 970 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 MAP7D2Q96T17 732 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 DHX36Q9H2U1 1008 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 SERPINB13Q9UIV8 391 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 SCAF8Q9UPN6 1271 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 ELP1O95163 1332 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 TPM3P06753 285 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 RPS12P25398 132 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 SHMT1P34896 483 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 RBM26Q5T8P6 1007 aaKnown RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 SAMD7Q7Z3H4 446 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 CATIPQ7Z7H3 387 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 CDAN1Q8IWY9 1227 aa15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 ASTN2O75129 1339 aaPredicted RBP15.24■□□□□ 0.03
SQSTM1-201ENST00000360718 CCDC196A0A1B0GTZ2 297 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 CCDC192P0DO97 292 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 TPRNQ4KMQ1 711 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 ZSCAN29Q8IWY8 852 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 ZNF654Q8IZM8 581 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 FUCA2Q9BTY2 467 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 SWAP70Q9UH65 585 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 CNOT7Q9UIV1 285 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 ENTPD3O75355 529 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 FDPSP14324 419 aaKnown RBP15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 PPP2R5BQ15173 497 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 SHROOM1Q2M3G4 852 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 DPF2Q92785 391 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 SCAND2PQ9GZW5 306 aaPredicted RBP15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 ATRNL1Q5VV63 1379 aa15.23■□□□□ 0.03
SQSTM1-201ENST00000360718 MYO1BO43795 1136 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 CALM1P0DP23 149 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 CALM2P0DP24 149 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 CALM3P0DP25 149 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 AKR1B1P15121 316 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 NUP133Q8WUM0 1156 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 EHD4Q9H223 541 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 VEZTQ9HBM0 779 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 TCP11L1Q9NUJ3 509 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 NID2Q14112 1375 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 UQCRHLA0A096LP55 91 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 H3BQV1 296 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 DYNC1I1O14576 645 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 UQCRHP07919 91 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 NTRK3Q16288 839 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 RTN1Q16799 776 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 TBC1D10BQ4KMP7 808 aaPredicted RBP15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 IFFO2Q5TF58 517 aa15.22■□□□□ 0.03
SQSTM1-201ENST00000360718 DGKHQ86XP1 1220 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms