RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 SEPT2Q15019 361 aa20.23■□□□□ 0.83
CLN3-203ENST00000357806 MKNK2Q9HBH9 465 aa20.23■□□□□ 0.83
CLN3-203ENST00000357806 HSPD1P10809 573 aaKnown RBP20.22■□□□□ 0.83
CLN3-203ENST00000357806 AKR1B1P15121 316 aa20.22■□□□□ 0.83
CLN3-203ENST00000357806 GUCY1A2P33402 732 aa20.22■□□□□ 0.83
CLN3-203ENST00000357806 PPARAQ07869 468 aa20.22■□□□□ 0.83
CLN3-203ENST00000357806 PABPC4Q13310 644 aaKnown RBP eCLIP20.22■□□□□ 0.833e-6■■■■□ 26.6
CLN3-203ENST00000357806 ERICH6BQ5W0A0 696 aa20.22■□□□□ 0.83
CLN3-203ENST00000357806 STK11IPQ8N1F8 1099 aa20.22■□□□□ 0.83
CLN3-203ENST00000357806 PNMA3Q9UL41 463 aa20.22■□□□□ 0.83
CLN3-203ENST00000357806 DGKZQ13574 1117 aa20.21■□□□□ 0.83
CLN3-203ENST00000357806 ALX1Q15699 326 aa20.21■□□□□ 0.83
CLN3-203ENST00000357806 TREML2Q5T2D2 321 aa20.21■□□□□ 0.83
CLN3-203ENST00000357806 USP14P54578 494 aa20.2■□□□□ 0.82
CLN3-203ENST00000357806 PDE4BQ07343 736 aa20.2■□□□□ 0.82
CLN3-203ENST00000357806 USP17L2Q6R6M4 530 aa20.2■□□□□ 0.82
CLN3-203ENST00000357806 TNS4Q8IZW8 715 aa20.2■□□□□ 0.82
CLN3-203ENST00000357806 RAD50Q92878 1312 aa20.2■□□□□ 0.82
CLN3-203ENST00000357806 ADGRA2Q96PE1 1338 aa20.2■□□□□ 0.82
CLN3-203ENST00000357806 RASA1P20936 1047 aa20.19■□□□□ 0.82
CLN3-203ENST00000357806 SP3Q02447 781 aa20.19■□□□□ 0.82
CLN3-203ENST00000357806 ICA1Q05084 483 aa20.19■□□□□ 0.82
CLN3-203ENST00000357806 ERO1AQ96HE7 468 aa20.19■□□□□ 0.82
CLN3-203ENST00000357806 KIAA1683Q9H0B3 1180 aa20.19■□□□□ 0.82
CLN3-203ENST00000357806 ARHGEF10LQ9HCE6 1279 aa20.19■□□□□ 0.82
CLN3-203ENST00000357806 FGAP02671 866 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 CYP2C8P10632 490 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 ZYXQ15942 572 aaKnown RBP20.18■□□□□ 0.82
CLN3-203ENST00000357806 ACER1Q8TDN7 264 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 SMCR8Q8TEV9 937 aaPredicted RBP20.18■□□□□ 0.82
CLN3-203ENST00000357806 RUFY2Q8WXA3 655 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 C12orf42Q96LP6 360 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 SH2D4AQ9H788 454 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 RLFQ13129 1914 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 OSBPP22059 807 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 CTU1Q7Z7A3 348 aaKnown RBP20.18■□□□□ 0.82
CLN3-203ENST00000357806 ZNF444Q8N0Y2 327 aaPredicted RBP20.18■□□□□ 0.82
CLN3-203ENST00000357806 EMILIN3Q9NT22 766 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 ANAPC4Q9UJX5 808 aa20.18■□□□□ 0.82
CLN3-203ENST00000357806 PLIN4Q96Q06 1357 aa20.17■□□□□ 0.82
CLN3-203ENST00000357806 PRDM1O75626 825 aa20.17■□□□□ 0.82
CLN3-203ENST00000357806 C17orf99Q6UX52 265 aa20.17■□□□□ 0.82
CLN3-203ENST00000357806 CLEC10AQ8IUN9 316 aa20.17■□□□□ 0.82
CLN3-203ENST00000357806 KANSL2Q9H9L4 492 aa20.17■□□□□ 0.82
CLN3-203ENST00000357806 CPA4Q9UI42 421 aa20.17■□□□□ 0.82
CLN3-203ENST00000357806 COL11A1P12107 1806 aaPredicted RBP20.16■□□□□ 0.82
CLN3-203ENST00000357806 A0A0G2JMZ2 1700 aa20.16■□□□□ 0.82
CLN3-203ENST00000357806 CHMLP26374 656 aa20.16■□□□□ 0.82
CLN3-203ENST00000357806 HOXA7P31268 230 aaPredicted RBP20.16■□□□□ 0.82
CLN3-203ENST00000357806 IRX3P78415 501 aaPredicted RBP20.16■□□□□ 0.82
CLN3-203ENST00000357806 CTDSPL2Q05D32 466 aa20.16■□□□□ 0.82
CLN3-203ENST00000357806 SKAP1Q86WV1 359 aa20.16■□□□□ 0.82
CLN3-203ENST00000357806 CD99L2Q8TCZ2 262 aa20.16■□□□□ 0.82
CLN3-203ENST00000357806 PPP4R2Q9NY27 417 aa20.16■□□□□ 0.82
CLN3-203ENST00000357806 A0A1W2PRG0 241 aa20.15■□□□□ 0.82
CLN3-203ENST00000357806 BMP2KLQ5H9B9 411 aa20.15■□□□□ 0.82
CLN3-203ENST00000357806 DSCC1Q9BVC3 393 aa20.15■□□□□ 0.82
CLN3-203ENST00000357806 ASCC2Q9H1I8 757 aaPredicted RBP20.15■□□□□ 0.82
CLN3-203ENST00000357806 TSPY3P0CV98 308 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 TSPY8P0CW00 308 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 VCAM1P19320 739 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 KIF22Q14807 665 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-203ENST00000357806 IL25Q9H293 177 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.14■□□□□ 0.81
CLN3-203ENST00000357806 TMX2Q9Y320 296 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 DOCK3Q8IZD9 2030 aa20.14■□□□□ 0.81
CLN3-203ENST00000357806 BCRP11274 1271 aa20.13■□□□□ 0.81
CLN3-203ENST00000357806 EEF2P13639 858 aaKnown RBP20.13■□□□□ 0.81
CLN3-203ENST00000357806 GCLCP48506 637 aaPredicted RBP20.13■□□□□ 0.81
CLN3-203ENST00000357806 LACTBP83111 547 aaPredicted RBP20.13■□□□□ 0.81
CLN3-203ENST00000357806 ATP2B2Q01814 1243 aa20.13■□□□□ 0.81
CLN3-203ENST00000357806 ARHGEF6Q15052 776 aa20.13■□□□□ 0.81
CLN3-203ENST00000357806 PKN2Q16513 984 aaKnown RBP20.13■□□□□ 0.81
CLN3-203ENST00000357806 LPAR1Q92633 364 aa20.13■□□□□ 0.81
CLN3-203ENST00000357806 MCOLN1Q9GZU1 580 aa20.13■□□□□ 0.81
CLN3-203ENST00000357806 HAND2P61296 217 aa20.12■□□□□ 0.81
CLN3-203ENST00000357806 SIAH1Q8IUQ4 282 aa20.12■□□□□ 0.81
CLN3-203ENST00000357806 VCPKMTQ9H867 229 aa20.12■□□□□ 0.81
CLN3-203ENST00000357806 TRIM17Q9Y577 477 aa20.12■□□□□ 0.81
CLN3-203ENST00000357806 IGKV6D-41A0A0C4DH26 115 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 TSPY2A6NKD2 308 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L15C9J2P7 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L13C9JLJ4 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L11C9JVI0 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L18D6R9N7 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L22D6RA61 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L17D6RBQ6 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L19D6RCP7 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L20D6RJB6 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 ORC4O43929 436 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 PCP11498 1178 aaKnown RBP20.11■□□□□ 0.81
CLN3-203ENST00000357806 USP17L24Q0WX57 530 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 OTOP1Q7RTM1 612 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 NEDD1Q8NHV4 660 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 EFCC1Q9HA90 598 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 GOPCQ9HD26 462 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 ZNF213O14771 459 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 FGRP09769 529 aa20.11■□□□□ 0.81
CLN3-203ENST00000357806 HERVK_113P62684 666 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms