RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 KLF18A0A0U1RQI7 1052 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 GNA11P29992 359 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 FCGRTP55899 365 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 PPATQ06203 517 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 CDK5RAP3Q96JB5 506 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 ANP32EQ9BTT0 268 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 HOOK1Q9UJC3 728 aaKnown RBP10.64□□□□□ -0.71
UPF2-202ENST00000357604 CASZ1Q86V15 1759 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 SPDYE3A6NKU9 549 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 ADM5C9JUS6 153 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 CALML3P27482 149 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 NCAPG2Q86XI2 1143 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 STAG1Q8WVM7 1258 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 KIFC2Q96AC6 838 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 SLF1Q9BQI6 1058 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 MTA3Q9BTC8 594 aa10.64□□□□□ -0.71
UPF2-202ENST00000357604 YDJCA8MPS7 323 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 B4E1Z4 1266 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 UBXN2AP68543 259 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 TRPM4Q8TD43 1214 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 TBC1D12O60347 775 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 BMP3P12645 472 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 A0A0D9SFI3 127 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 GH2P01242 217 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 NAPAP54920 295 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 GBP4Q96PP9 640 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 TMEM39BQ9GZU3 492 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 CCDC194A0A1B0GVG4 234 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 WDR46O15213 610 aaKnown RBP10.63□□□□□ -0.71
UPF2-202ENST00000357604 STAT2P52630 851 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 STK3Q13188 491 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 PPP4R3AQ6IN85 833 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 TXNRD3Q86VQ6 643 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 RAB34Q9BZG1 259 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 NMRK2Q9NPI5 230 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 ADD3Q9UEY8 706 aaKnown RBP10.63□□□□□ -0.71
UPF2-202ENST00000357604 LIMCH1Q9UPQ0 1083 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 RABGAP1Q9Y3P9 1069 aa10.63□□□□□ -0.71
UPF2-202ENST00000357604 DDX60Q8IY21 1712 aaKnown RBP10.63□□□□□ -0.71
UPF2-202ENST00000357604 ORC4O43929 436 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 GCLCP48506 637 aaPredicted RBP10.62□□□□□ -0.71
UPF2-202ENST00000357604 C16orf86Q6ZW13 317 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 RUFY3Q7L099 469 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 EDC3Q96F86 508 aaKnown RBP10.62□□□□□ -0.71
UPF2-202ENST00000357604 STK24Q9Y6E0 443 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 FAM47AQ5JRC9 791 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 CTR9Q6PD62 1173 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 OSBP2Q969R2 916 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 UBE2Q2LH0YL09 131 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 ZBTB22O15209 634 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 TMEM266Q2M3C6 531 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 MFSD14CQ5VZR4 134 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 Q6ZUG5 572 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 HEATR3Q7Z4Q2 680 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 DPP9Q86TI2 863 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 ZBTB48P10074 688 aaPredicted RBP10.62□□□□□ -0.71
UPF2-202ENST00000357604 MICU3Q86XE3 530 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 ZBTB21Q9ULJ3 1066 aa10.62□□□□□ -0.71
UPF2-202ENST00000357604 E7EWF7 191 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 FGAP02671 866 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 C12orf60Q5U649 245 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 JMYQ8N9B5 988 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 RPS6KB1P23443 525 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 SYDE2Q5VT97 1194 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 CCDC174Q6PII3 467 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 NLRX1Q86UT6 975 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 OPTNQ96CV9 577 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 TMEM106CQ9BVX2 250 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 WDR19Q8NEZ3 1342 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 TMEM232C9JQI7 657 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 HOMER1Q86YM7 354 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 NYAP2Q9P242 653 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 SYNPO2Q9UMS6 1093 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 NBPF11Q86T75 865 aa10.61□□□□□ -0.71
UPF2-202ENST00000357604 PTPDC1A2A3K4 754 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 PRKAB2O43741 272 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 PRDM1O75626 825 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 PROCA1Q8NCQ7 364 aaPredicted RBP10.6□□□□□ -0.71
UPF2-202ENST00000357604 VTI1AQ96AJ9 217 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 CREBZFQ9NS37 354 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 KCNH4Q9UQ05 1017 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 CAP2P40123 477 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 DGKHQ86XP1 1220 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 PIBF1Q8WXW3 757 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 SLC25A27O95847 323 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 SLC26A6Q9BXS9 759 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 KCNQ5Q9NR82 932 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 GPHNQ9NQX3 736 aaPredicted RBP10.6□□□□□ -0.71
UPF2-202ENST00000357604 CCPG1Q9ULG6 757 aa10.6□□□□□ -0.71
UPF2-202ENST00000357604 NUCB2P80303 420 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 APOBEC3HQ6NTF7 200 aaKnown RBP10.59□□□□□ -0.71
UPF2-202ENST00000357604 ANKRD35Q8N283 1001 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 LRRC47Q8N1G4 583 aaKnown RBP10.59□□□□□ -0.71
UPF2-202ENST00000357604 GCOM1H8Y6P7 765 aaPredicted RBP10.59□□□□□ -0.71
UPF2-202ENST00000357604 POLR2MP0CAP2 368 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 ADCY7P51828 1080 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 GNPTABQ3T906 1256 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 FBXO11Q86XK2 927 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 RAET1EQ8TD07 263 aa10.59□□□□□ -0.71
UPF2-202ENST00000357604 DYNLL2Q96FJ2 89 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms