RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 HMX1Q9NP08 348 aaPredicted RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 GOLIM4O00461 696 aa17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 POLR3DP05423 398 aaPredicted RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 IFIT2P09913 472 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 DIS3LQ8TF46 1054 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 DNAJC2Q99543 621 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 CRNKL1Q9BZJ0 848 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 CABP5Q9NP86 173 aa17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 RBM27Q9P2N5 1060 aaKnown RBP17.54■□□□□ 0.4
PRPF40A-201ENST00000354363 ZNF532Q9HCE3 1301 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 TCRBV5S4A2TA0A5A2 114 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L15C9J2P7 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L13C9JLJ4 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L11C9JVI0 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L18D6R9N7 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L22D6RA61 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L17D6RBQ6 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L19D6RCP7 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L20D6RJB6 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 XRCC5P13010 732 aaKnown RBP17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 GUCY1A2P33402 732 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP14P54578 494 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 GABPAQ06546 454 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP17L24Q0WX57 530 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 PDE3AQ14432 1141 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 MAP3K21Q5TCX8 1036 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 GPR142Q7Z601 462 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 ANKLE1Q8NAG6 615 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 ACER1Q8TDN7 264 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 USP6NLQ92738 828 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 KIAA1683Q9H0B3 1180 aa17.53■□□□□ 0.4
PRPF40A-201ENST00000354363 FRMPD3Q5JV73 1810 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 EVI5O60447 810 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 RAB11FIP3O75154 756 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 CNMDO75829 334 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 EVX2Q03828 476 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 MORN1Q5T089 497 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 CATSPERGQ6ZRH7 1159 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 NECAB2Q7Z6G3 386 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 EDC3Q96F86 508 aaKnown RBP17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 BCL11AQ9H165 835 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 PRO3102Q9H379 93 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 RABGAP1Q9Y3P9 1069 aa17.52■□□□□ 0.4
PRPF40A-201ENST00000354363 RLFQ13129 1914 aa17.52■□□□□ 0.39
PRPF40A-201ENST00000354363 VCAM1P19320 739 aa17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 PLEKHH3Q7Z736 793 aa17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 CCAR1Q8IX12 1150 aaKnown RBP17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 LCORLQ8N3X6 602 aa17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 SDR42E1Q8WUS8 393 aa17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 MCM9Q9NXL9 1143 aa17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 RANBP2P49792 3224 aaKnown RBP17.51■□□□□ 0.39
PRPF40A-201ENST00000354363 PRKAR2AP13861 404 aaKnown RBP17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 RGS2P41220 211 aa17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 MNX1P50219 401 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 SEPT2Q15019 361 aa17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 TRMT44Q8IYL2 757 aaKnown RBP17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 DCP1AQ9NPI6 582 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 ZKSCAN1P17029 563 aaPredicted RBP17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 BOLA2Q9H3K6 86 aa17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 PAG1Q9NWQ8 432 aa17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 OGDHLQ9ULD0 1010 aa17.5■□□□□ 0.39
PRPF40A-201ENST00000354363 PARP14Q460N5 1801 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 CACNB2Q08289 660 aaPredicted RBP17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 CCL14Q16627 93 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 SLFNL1Q499Z3 407 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 LBX2Q6XYB7 198 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 APBA2Q99767 749 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 CHMP4BQ9H444 224 aaKnown RBP17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 RPAP3Q9H6T3 665 aaPredicted RBP17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 ARMT1Q9H993 441 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 RCAN3Q9UKA8 241 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 SZT2Q5T011 3432 aa17.49■□□□□ 0.39
PRPF40A-201ENST00000354363 ZNFX1Q9P2E3 1918 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 CYP2D6P10635 497 aa17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 ATP5JP18859 108 aa17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 ADD2P35612 726 aa17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 CCNA1P78396 465 aa17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 NBPF3Q9H094 633 aa17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 CWC22Q9HCG8 908 aaKnown RBP17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 BTBD7Q9P203 1132 aa17.48■□□□□ 0.39
PRPF40A-201ENST00000354363 A0A0G2JMZ2 1700 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 A0A1W2PRG0 241 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 SPDYE16A6NNV3 312 aaPredicted RBP17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 MPHOSPH10O00566 681 aaKnown RBP17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 MAP2K5Q13163 448 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 SLC44A5Q8NCS7 719 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 HAUS7Q99871 368 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 PRKAB2O43741 272 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 MBD4O95243 580 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 CCND3P30281 292 aaPredicted RBP17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 DYNLL2Q96FJ2 89 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 C11orf49Q9H6J7 331 aa17.47■□□□□ 0.39
PRPF40A-201ENST00000354363 COL11A1P12107 1806 aaPredicted RBP17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 SLC15A5A6NIM6 579 aa17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 GLRX3O76003 335 aaKnown RBP17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 PTPREP23469 700 aa17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 C20orf194Q5TEA3 1177 aa17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 WDR78Q5VTH9 848 aa17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 ATP8A2Q9NTI2 1148 aa17.46■□□□□ 0.39
PRPF40A-201ENST00000354363 SWAP70Q9UH65 585 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms