RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 TRIM75PA6NK02 468 aa24.95■■□□□ 1.58
SHMT1-202ENST00000352886 TXNRD3Q86VQ6 643 aa24.95■■□□□ 1.58
SHMT1-202ENST00000352886 CCDC112Q8NEF3 446 aa24.95■■□□□ 1.58
SHMT1-202ENST00000352886 KCND1Q9NSA2 647 aa24.95■■□□□ 1.58
SHMT1-202ENST00000352886 ORC4O43929 436 aa24.94■■□□□ 1.58
SHMT1-202ENST00000352886 FAM47AQ5JRC9 791 aa24.94■■□□□ 1.58
SHMT1-202ENST00000352886 TMTC3Q6ZXV5 915 aa24.94■■□□□ 1.58
SHMT1-202ENST00000352886 ATP8A2Q9NTI2 1148 aa24.94■■□□□ 1.58
SHMT1-202ENST00000352886 BAZ2BQ9UIF8 2168 aaKnown RBP24.94■■□□□ 1.58
SHMT1-202ENST00000352886 CFAP100Q494V2 611 aa24.94■■□□□ 1.58
SHMT1-202ENST00000352886 GRAMD1CQ8IYS0 662 aa24.94■■□□□ 1.58
SHMT1-202ENST00000352886 KIAA1551Q9HCM1 1747 aa24.93■■□□□ 1.58
SHMT1-202ENST00000352886 CBFA2T2O43439 604 aa24.93■■□□□ 1.58
SHMT1-202ENST00000352886 NT5DC1Q5TFE4 455 aa24.93■■□□□ 1.58
SHMT1-202ENST00000352886 AMIGO3Q86WK7 504 aa24.93■■□□□ 1.58
SHMT1-202ENST00000352886 SMARCE1Q969G3 411 aa24.93■■□□□ 1.58
SHMT1-202ENST00000352886 RTCBQ9Y3I0 505 aaKnown RBP24.93■■□□□ 1.58
SHMT1-202ENST00000352886 CYP2D6P10635 497 aa24.93■■□□□ 1.58
SHMT1-202ENST00000352886 DHX8Q14562 1220 aaKnown RBP24.93■■□□□ 1.58
SHMT1-202ENST00000352886 CCNL1Q9UK58 526 aaPredicted RBP24.93■■□□□ 1.58
SHMT1-202ENST00000352886 CNTNAP5Q8WYK1 1306 aa24.92■■□□□ 1.58
SHMT1-202ENST00000352886 ACTN4O43707 911 aaKnown RBP24.92■■□□□ 1.58
SHMT1-202ENST00000352886 E4F1Q66K89 784 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-202ENST00000352886 CTCFLQ8NI51 663 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-202ENST00000352886 ARPP21Q9UBL0 812 aaPredicted RBP24.92■■□□□ 1.58
SHMT1-202ENST00000352886 TM4SF1P30408 202 aa24.92■■□□□ 1.58
SHMT1-202ENST00000352886 SARSP49591 514 aaKnown RBP24.92■■□□□ 1.58
SHMT1-202ENST00000352886 BRMS1Q9HCU9 246 aa24.92■■□□□ 1.58
SHMT1-202ENST00000352886 NPHP1O15259 732 aa24.91■■□□□ 1.58
SHMT1-202ENST00000352886 MYO1BO43795 1136 aa24.91■■□□□ 1.58
SHMT1-202ENST00000352886 SRBD1Q8N5C6 995 aaKnown RBP24.91■■□□□ 1.58
SHMT1-202ENST00000352886 ARHGEF1Q92888 912 aaKnown RBP24.91■■□□□ 1.58
SHMT1-202ENST00000352886 NRDCO43847 1150 aa24.91■■□□□ 1.58
SHMT1-202ENST00000352886 TOM1O60784 492 aa24.91■■□□□ 1.58
SHMT1-202ENST00000352886 ZNF827Q17R98 1081 aa24.91■■□□□ 1.58
SHMT1-202ENST00000352886 KANK3Q6NY19 840 aa24.91■■□□□ 1.58
SHMT1-202ENST00000352886 DZIP1Q86YF9 867 aaKnown RBP24.91■■□□□ 1.58
SHMT1-202ENST00000352886 TNRC6CQ9HCJ0 1690 aaKnown RBP24.9■■□□□ 1.58
SHMT1-202ENST00000352886 WNT7AO00755 349 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 FAM182BQ5T319 152 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 ANKRD7Q92527 254 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 NOL10Q9BSC4 688 aaKnown RBP24.9■■□□□ 1.58
SHMT1-202ENST00000352886 MORC2Q9Y6X9 1032 aaPredicted RBP24.9■■□□□ 1.58
SHMT1-202ENST00000352886 MORC3Q14149 939 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 NPY5RQ15761 445 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 SLC4A8Q2Y0W8 1093 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 SBK1Q52WX2 424 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 HSP90AA4PQ58FG1 418 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 NOM1Q5C9Z4 860 aaKnown RBP24.9■■□□□ 1.58
SHMT1-202ENST00000352886 MLKLQ8NB16 471 aa24.9■■□□□ 1.58
SHMT1-202ENST00000352886 TSPY2A6NKD2 308 aa24.89■■□□□ 1.58
SHMT1-202ENST00000352886 DHX58Q96C10 678 aa24.89■■□□□ 1.58
SHMT1-202ENST00000352886 EPSTI1Q96J88 318 aa24.89■■□□□ 1.58
SHMT1-202ENST00000352886 MCM9Q9NXL9 1143 aa24.89■■□□□ 1.58
SHMT1-202ENST00000352886 DACH1Q9UI36 760 aa24.89■■□□□ 1.58
SHMT1-202ENST00000352886 TMEM232C9JQI7 657 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 FMR1Q06787 632 aaKnown RBP eCLIP24.88■■□□□ 1.57
SHMT1-202ENST00000352886 VSTM4Q8IW00 320 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 TRIML1Q8N9V2 468 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 TNFRSF25Q93038 417 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 IRS2Q9Y4H2 1338 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 A0A087X0B3 334 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 SBF2Q86WG5 1849 aa24.88■■□□□ 1.57
SHMT1-202ENST00000352886 KCNJ6P48051 423 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 NCBP1Q09161 790 aaKnown RBP24.87■■□□□ 1.57
SHMT1-202ENST00000352886 PTPN21Q16825 1174 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 PPP1R13BQ96KQ4 1090 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 NFE2L3Q9Y4A8 694 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 NHSQ6T4R5 1651 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 TAF1LQ8IZX4 1826 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 PSDA5PKW4 1024 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-202ENST00000352886 USP17L8P0C7I0 530 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 ZNF174Q15697 407 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 SPTY2D1Q68D10 685 aaPredicted RBP24.87■■□□□ 1.57
SHMT1-202ENST00000352886 SLC51AQ86UW1 340 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 SPATA20Q8TB22 786 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 SYMPKQ92797 1274 aaKnown RBP24.87■■□□□ 1.57
SHMT1-202ENST00000352886 ANKIB1Q9P2G1 1089 aa24.87■■□□□ 1.57
SHMT1-202ENST00000352886 BMP15O95972 392 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 TOP1P11387 765 aaKnown RBP24.86■■□□□ 1.57
SHMT1-202ENST00000352886 TTC38Q5R3I4 469 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 TRMT44Q8IYL2 757 aaKnown RBP24.86■■□□□ 1.57
SHMT1-202ENST00000352886 FERMT2Q96AC1 680 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 INTS13Q9NVM9 706 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 SCG2P13521 617 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 TMED8Q6PL24 325 aaPredicted RBP24.86■■□□□ 1.57
SHMT1-202ENST00000352886 PDCL2Q8N4E4 241 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 KIF18AQ8NI77 898 aa24.86■■□□□ 1.57
SHMT1-202ENST00000352886 ENOX1Q8TC92 643 aaKnown RBP24.86■■□□□ 1.57
SHMT1-202ENST00000352886 CCDC94Q9BW85 323 aaPredicted RBP24.86■■□□□ 1.57
SHMT1-202ENST00000352886 KIF2AO00139 706 aaPredicted RBP24.85■■□□□ 1.57
SHMT1-202ENST00000352886 RCSD1Q6JBY9 416 aa24.85■■□□□ 1.57
SHMT1-202ENST00000352886 SYCP1Q15431 976 aa24.85■■□□□ 1.57
SHMT1-202ENST00000352886 CCDC34Q96HJ3 373 aa24.85■■□□□ 1.57
SHMT1-202ENST00000352886 AFMP43652 599 aa24.84■■□□□ 1.57
SHMT1-202ENST00000352886 NLRP5P59047 1200 aa24.84■■□□□ 1.57
SHMT1-202ENST00000352886 LDHBP07195 334 aaKnown RBP24.84■■□□□ 1.57
SHMT1-202ENST00000352886 SLFN14P0C7P3 912 aa24.84■■□□□ 1.57
SHMT1-202ENST00000352886 ZNF18P17022 549 aa24.84■■□□□ 1.57
SHMT1-202ENST00000352886 CDK11BP21127 795 aaKnown RBP24.84■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms