RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 TMED8Q6PL24 325 aaPredicted RBP18.04■□□□□ 0.48
HMGA1-202ENST00000347617 TRERF1Q96PN7 1200 aa18.04■□□□□ 0.48
HMGA1-202ENST00000347617 ZCCHC17Q9NP64 241 aaKnown RBP18.04■□□□□ 0.48
HMGA1-202ENST00000347617 MED4Q9NPJ6 270 aa18.04■□□□□ 0.48
HMGA1-202ENST00000347617 ECM29Q5VYK3 1845 aa18.04■□□□□ 0.48
HMGA1-202ENST00000347617 PDS5AQ29RF7 1337 aaKnown RBP18.03■□□□□ 0.48
HMGA1-202ENST00000347617 WDHD1O75717 1129 aaPredicted RBP18.03■□□□□ 0.48
HMGA1-202ENST00000347617 CHGBP05060 677 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 ZNF18P17022 549 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 MAGEA9P43362 315 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 RASGRF1Q13972 1273 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 WASHC4Q2M389 1173 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 CAVIN4Q5BKX8 364 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 NCOA7Q8NI08 942 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 AKT1S1Q96B36 256 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 CCDC51Q96ER9 411 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 PIH1D3Q9NQM4 214 aaKnown RBP18.03■□□□□ 0.48
HMGA1-202ENST00000347617 MYO1AQ9UBC5 1043 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 A0A1B0GUL6 1792 aa18.03■□□□□ 0.48
HMGA1-202ENST00000347617 TMEM232C9JQI7 657 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 M0R2C6 588 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 PRC1O43663 620 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 MCM3P25205 808 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 NOP2P46087 812 aaKnown RBP18.02■□□□□ 0.48
HMGA1-202ENST00000347617 PTPAQ15257 358 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 WHAMMP3Q1A5X7 153 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 CRY2Q49AN0 593 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 HSP90B2PQ58FF3 399 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 SLC9C2Q5TAH2 1124 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 NT5DC1Q5TFE4 455 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 PRR5LQ6MZQ0 368 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 PI16Q6UXB8 463 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 MB21D2Q8IYB1 491 aaPredicted RBP18.02■□□□□ 0.48
HMGA1-202ENST00000347617 PDILTQ8N807 584 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 CNNM3Q8NE01 707 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 FAM107BQ9H098 131 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 INTS13Q9NVM9 706 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 RAI14Q9P0K7 980 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 HPS5Q9UPZ3 1129 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 ZMYM6O95789 1325 aa18.02■□□□□ 0.48
HMGA1-202ENST00000347617 AKR1B15C9JRZ8 316 aaPredicted RBP18.02■□□□□ 0.47
HMGA1-202ENST00000347617 H3BQF6 201 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 APBA3O96018 575 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 SERPINB2P05120 415 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 BCAMP50895 628 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 GRAPQ13588 217 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 SHC4Q6S5L8 630 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 FBXO33Q7Z6M2 555 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 C10orf67Q8IYJ2 551 aa18.02■□□□□ 0.47
HMGA1-202ENST00000347617 GRAPLQ8TC17 118 aaPredicted RBP18.02■□□□□ 0.47
HMGA1-202ENST00000347617 RGPD3A6NKT7 1758 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 RGPD4Q7Z3J3 1758 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 TCRBV5S4A2TA0A5A2 114 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 KLRG2A4D1S0 409 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 KIF28PB7ZC32 967 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 ERCC5P28715 1186 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 PNOCQ13519 176 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 TOGARAM2Q6ZUX3 1019 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 RALYLQ86SE5 291 aaKnown RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 METTL16Q86W50 562 aaKnown RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 FAM177A1Q8N128 213 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 NLGN1Q8N2Q7 840 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 VIPAS39Q9H9C1 493 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 L1RE1Q9UN81 338 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 TTF2Q9UNY4 1162 aaKnown RBP18.01■□□□□ 0.47
HMGA1-202ENST00000347617 DOCK2Q92608 1830 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 COL4A1P02462 1669 aa18.01■□□□□ 0.47
HMGA1-202ENST00000347617 PDE6AP16499 860 aa18■□□□□ 0.47
HMGA1-202ENST00000347617 IRX3P78415 501 aaPredicted RBP18■□□□□ 0.47
HMGA1-202ENST00000347617 OTUD7BQ6GQQ9 843 aa18■□□□□ 0.47
HMGA1-202ENST00000347617 CTCFLQ8NI51 663 aaPredicted RBP18■□□□□ 0.47
HMGA1-202ENST00000347617 PUS7LQ9H0K6 701 aaKnown RBP18■□□□□ 0.47
HMGA1-202ENST00000347617 VPS18Q9P253 973 aa18■□□□□ 0.47
HMGA1-202ENST00000347617 KCNH3Q9ULD8 1083 aa18■□□□□ 0.47
HMGA1-202ENST00000347617 DENND2AQ9ULE3 1009 aa18■□□□□ 0.47
HMGA1-202ENST00000347617 LEMD3Q9Y2U8 911 aa18■□□□□ 0.47
HMGA1-202ENST00000347617 GPAA1O43292 621 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 ALX1Q15699 326 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 PPM1EQ8WY54 764 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 FAM84BQ96KN1 310 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-202ENST00000347617 MAP3K14Q99558 947 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 ANKZF1Q9H8Y5 726 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 PCDHA5Q9Y5H7 936 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 A0A1B0GTH6 734 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 CTAGE9A4FU28 777 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 SNAP23O00161 211 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 IDH1O75874 414 aaKnown RBP17.99■□□□□ 0.47
HMGA1-202ENST00000347617 HOXA10P31260 410 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-202ENST00000347617 MDM2Q00987 491 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-202ENST00000347617 TRIM29Q14134 588 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 NR1I3Q14994 352 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 C15orf52Q6ZUT6 534 aaKnown RBP17.99■□□□□ 0.47
HMGA1-202ENST00000347617 VPS37DQ86XT2 251 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 KRI1Q8N9T8 703 aaKnown RBP17.99■□□□□ 0.47
HMGA1-202ENST00000347617 CTAGE1Q96RT6 745 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 ALG1Q9BT22 464 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 PDE11AQ9HCR9 933 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 ADGRG1Q9Y653 693 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 ZNF532Q9HCE3 1301 aa17.99■□□□□ 0.47
HMGA1-202ENST00000347617 STK36Q9NRP7 1315 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms