RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 GDAQ9Y2T3 454 aa13.52□□□□□ -0.24
USP1-201ENST00000339950 SPATA31A3Q5VYP0 1347 aa13.52□□□□□ -0.24
USP1-201ENST00000339950 SYNRGQ9UMZ2 1314 aa13.52□□□□□ -0.24
USP1-201ENST00000339950 A0A1W2PQ27 194 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 A0A1W2PQ64 194 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 A0A1W2PQD8 194 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 GSG1L2A8MUP6 293 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 RBL2Q08999 1139 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 ISCA1Q9BUE6 129 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 TRIM49BA6NDI0 452 aa13.52□□□□□ -0.25
USP1-201ENST00000339950 ZNHIT6Q9NWK9 470 aaKnown RBP13.52□□□□□ -0.25
USP1-201ENST00000339950 USP17L3A6NCW0 530 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 USP17L4A6NCW7 530 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 KLRK1P26718 216 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 USP17L1Q7RTZ2 530 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.51□□□□□ -0.251e-7■■■■□ 26
USP1-201ENST00000339950 PRDM4Q9UKN5 801 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 UTYO14607 1347 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 VEGFAP15692 232 aaPredicted RBP13.51□□□□□ -0.25
USP1-201ENST00000339950 TXKP42681 527 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 NAPAP54920 295 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 CCDC96Q2M329 555 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 NBPF11Q86T75 865 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 CELF1Q92879 486 aaKnown RBP13.51□□□□□ -0.25
USP1-201ENST00000339950 HPS3Q969F9 1004 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 CCDC47Q96A33 483 aaKnown RBP13.51□□□□□ -0.25
USP1-201ENST00000339950 NLRP3Q96P20 1036 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 SETDB2Q96T68 719 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 GPCPD1Q9NPB8 672 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 CCDC87Q9NVE4 849 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 AK7Q96M32 723 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.51□□□□□ -0.255e-6■■■■■ 62.1
USP1-201ENST00000339950 ANKARQ7Z5J8 1434 aa13.51□□□□□ -0.25
USP1-201ENST00000339950 CIAO1O76071 339 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 RASGRP2Q7LDG7 609 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 CRNKL1Q9BZJ0 848 aaKnown RBP13.5□□□□□ -0.25
USP1-201ENST00000339950 LOC102724428A0A0B4J2F2 783 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 EPS15P42566 896 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 TNNI2P48788 182 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 SIK1P57059 783 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 UBE3CQ15386 1083 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 FAM107BQ9H098 131 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 RGPD8O14715 1765 aaPredicted RBP13.5□□□□□ -0.25
USP1-201ENST00000339950 MMP1P03956 469 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 ATL3Q6DD88 541 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.5□□□□□ -0.25
USP1-201ENST00000339950 ZNF652Q9Y2D9 606 aa13.5□□□□□ -0.25
USP1-201ENST00000339950 RBM6P78332 1123 aaKnown RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 STIM1Q13586 685 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 EARS2Q5JPH6 523 aaKnown RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 SLC51AQ86UW1 340 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 CRACR2BQ8N4Y2 399 aaPredicted RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 CARD10Q9BWT7 1032 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 KANSL2Q9H9L4 492 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 SUGCTQ9HAC7 445 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 OAS2P29728 719 aaKnown RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 CYP27A1Q02318 531 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 IGDCC4Q8TDY8 1250 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 ANKRD7Q92527 254 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 ZSCAN10Q96SZ4 725 aaPredicted RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 GPR108Q9NPR9 543 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 NELFBQ8WX92 580 aa13.49□□□□□ -0.25
USP1-201ENST00000339950 FAM207AQ9NSI2 230 aaPredicted RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 FRMPD2Q68DX3 1309 aaPredicted RBP13.49□□□□□ -0.25
USP1-201ENST00000339950 ARHGAP6O43182 974 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 SRGAP2O75044 1071 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 CACNB1Q02641 598 aaPredicted RBP13.48□□□□□ -0.25
USP1-201ENST00000339950 IQUBQ8NA54 791 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 RGS22Q8NE09 1264 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 CRACR2AQ9BSW2 395 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 RIMBP3CA6NJZ7 1639 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 RIMBP3BA6NNM3 1639 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 RIMBP3Q9UFD9 1639 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 CCDC181Q5TID7 509 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 ADGRA1Q86SQ6 560 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 CLEC10AQ8IUN9 316 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 SLC35F6Q8N357 371 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 SEPT11Q9NVA2 429 aaKnown RBP13.48□□□□□ -0.25
USP1-201ENST00000339950 BIN2Q9UBW5 565 aaPredicted RBP13.48□□□□□ -0.25
USP1-201ENST00000339950 HIBADHP31937 336 aaKnown RBP13.48□□□□□ -0.25
USP1-201ENST00000339950 CUL4BQ13620 913 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 CCDC122Q5T0U0 273 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 TRIM10Q9UDY6 481 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 PXDNLA1KZ92 1463 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 C1orf167Q5SNV9 1468 aa13.48□□□□□ -0.25
USP1-201ENST00000339950 AKR1B10O60218 316 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 CCNT1O60563 726 aaKnown RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 CYP19A1P11511 503 aaPredicted RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 CHMP4BP1P59074 171 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 TCERG1LQ5VWI1 586 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 NCAPH2Q6IBW4 605 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 CACNA2D4Q7Z3S7 1137 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 ENAHQ8N8S7 591 aaPredicted RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 CTIFO43310 598 aaKnown RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 MEX3CQ5U5Q3 659 aaKnown RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 TTC19Q6DKK2 380 aaPredicted RBP13.47□□□□□ -0.25
USP1-201ENST00000339950 SARM1Q6SZW1 724 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 DTHD1Q6ZMT9 781 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 TECP42680 631 aa13.47□□□□□ -0.25
USP1-201ENST00000339950 VSTM4Q8IW00 320 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms