RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 ABCB5Q2M3G0 1257 aa12.91□□□□□ -0.34
CAPN3-202ENST00000337571 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.91□□□□□ -0.34
CAPN3-202ENST00000337571 GTF3C2Q8WUA4 911 aaPredicted RBP12.91□□□□□ -0.34
CAPN3-202ENST00000337571 NR2E3Q9Y5X4 410 aa12.91□□□□□ -0.34
CAPN3-202ENST00000337571 DOCK3Q8IZD9 2030 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L15C9J2P7 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L13C9JLJ4 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L11C9JVI0 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L18D6R9N7 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L22D6RA61 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L17D6RBQ6 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L19D6RCP7 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L20D6RJB6 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 HMGCRP04035 888 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 MAPK4P31152 587 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 VASPP50552 380 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-202ENST00000337571 USP17L24Q0WX57 530 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 ZYXQ15942 572 aaKnown RBP12.9□□□□□ -0.34
CAPN3-202ENST00000337571 NUDT12Q9BQG2 462 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.9□□□□□ -0.34
CAPN3-202ENST00000337571 HMX1Q9NP08 348 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-202ENST00000337571 EMILIN3Q9NT22 766 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 MCM9Q9NXL9 1143 aa12.9□□□□□ -0.34
CAPN3-202ENST00000337571 COLQQ9Y215 455 aaPredicted RBP12.9□□□□□ -0.34
CAPN3-202ENST00000337571 ZNF532Q9HCE3 1301 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 MPHOSPH10O00566 681 aaKnown RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 GLRX3O76003 335 aaKnown RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 PDE6AP16499 860 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 CYP2B6P20813 491 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 SHROOM1Q2M3G4 852 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 AMOTL1Q8IY63 956 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 TRMT44Q8IYL2 757 aaKnown RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 SP7Q8TDD2 431 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 SOCS4Q8WXH5 440 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 RIOK1Q9BRS2 568 aaKnown RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 PAGR1Q9BTK6 254 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 PAK6Q9NQU5 681 aaPredicted RBP12.89□□□□□ -0.35
CAPN3-202ENST00000337571 RBPJLQ9UBG7 517 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 GJD2Q9UKL4 321 aa12.89□□□□□ -0.35
CAPN3-202ENST00000337571 RPTORQ8N122 1335 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 EVI5O60447 810 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 PLCD1P51178 756 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 ERVK-9P63128 1117 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 ERVK-24P63145 666 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 CCNA1P78396 465 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 SIRT2Q8IXJ6 389 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 DDRGK1Q96HY6 314 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 KIAA1683Q9H0B3 1180 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 BOLA2Q9H3K6 86 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 PAG1Q9NWQ8 432 aa12.88□□□□□ -0.35
CAPN3-202ENST00000337571 XRCC5P13010 732 aaKnown RBP12.87□□□□□ -0.35
CAPN3-202ENST00000337571 ATP5JP18859 108 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 NECAB2Q7Z6G3 386 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 PLEKHH3Q7Z736 793 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 UBE2Q1Q7Z7E8 422 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 ANKLE1Q8NAG6 615 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 C12orf42Q96LP6 360 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 CRISPLD2Q9H0B8 497 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 TXNRD2Q9NNW7 524 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 RABGAP1Q9Y3P9 1069 aa12.87□□□□□ -0.35
CAPN3-202ENST00000337571 SHMT1P34896 483 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 RGS2P41220 211 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 Q3C1V9 767 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 WDR78Q5VTH9 848 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 ZSCAN25Q6NSZ9 544 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 CATSPERGQ6ZRH7 1159 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 SDR42E1Q8WUS8 393 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 PAWRQ96IZ0 340 aaKnown RBP12.86□□□□□ -0.35
CAPN3-202ENST00000337571 LRRCC1Q9C099 1032 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 ARMT1Q9H993 441 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 ATP8A2Q9NTI2 1148 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 SWAP70Q9UH65 585 aa12.86□□□□□ -0.35
CAPN3-202ENST00000337571 NAV1Q8NEY1 1877 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 TCRBV5S4A2TA0A5A2 114 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 PEX10O60683 326 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 ZKSCAN1P17029 563 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-202ENST00000337571 SEPT2Q15019 361 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 GPR142Q7Z601 462 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 LCORLQ8N3X6 602 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 ACER1Q8TDN7 264 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 EDC3Q96F86 508 aaKnown RBP12.85□□□□□ -0.35
CAPN3-202ENST00000337571 HAUS7Q99871 368 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 PORCNQ9H237 461 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 DCP1AQ9NPI6 582 aaPredicted RBP12.85□□□□□ -0.35
CAPN3-202ENST00000337571 HOXC10Q9NYD6 342 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 IVNS1ABPQ9Y6Y0 642 aa12.85□□□□□ -0.35
CAPN3-202ENST00000337571 MBD4O95243 580 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 VCAM1P19320 739 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 ADD2P35612 726 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 TRIM32Q13049 653 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 TMEM179Q6ZVK1 233 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 TRIB2Q92519 343 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 NBPF3Q9H094 633 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 RPAP3Q9H6T3 665 aaPredicted RBP12.84□□□□□ -0.35
CAPN3-202ENST00000337571 SH2D4AQ9H788 454 aa12.84□□□□□ -0.35
CAPN3-202ENST00000337571 PLXNB2O15031 1838 aa12.83□□□□□ -0.35
CAPN3-202ENST00000337571 FXR1P51114 621 aaKnown RBP eCLIP12.83□□□□□ -0.36
CAPN3-202ENST00000337571 GABPAQ06546 454 aa12.83□□□□□ -0.36
CAPN3-202ENST00000337571 COG2Q14746 738 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms