RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.54■□□□□ 0.08
SYNE3-201ENST00000334258 USP54Q70EL1 1684 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 LRRIQ3A6PVS8 624 aaPredicted RBP15.54■□□□□ 0.08
SYNE3-201ENST00000334258 SH2B2O14492 632 aaPredicted RBP15.54■□□□□ 0.08
SYNE3-201ENST00000334258 IFIT3O14879 490 aaKnown RBP15.54■□□□□ 0.08
SYNE3-201ENST00000334258 RNF40O75150 1001 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 CASP1P29466 404 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 WHAMMP3Q1A5X7 153 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 KANK3Q6NY19 840 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 LRRC31Q6UY01 552 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 PACS2Q86VP3 889 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 PPM1EQ8WY54 764 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 NGLY1Q96IV0 654 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 SLC4A9Q96Q91 983 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 SLF1Q9BQI6 1058 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 INCENPQ9NQS7 918 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 GUCA1BQ9UMX6 200 aa15.54■□□□□ 0.08
SYNE3-201ENST00000334258 COL18A1P39060 1754 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 N4BP3O15049 544 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 MFAP3LO75121 409 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 ERCC5P28715 1186 aaPredicted RBP15.53■□□□□ 0.08
SYNE3-201ENST00000334258 RRP12Q5JTH9 1297 aaKnown RBP15.53■□□□□ 0.08
SYNE3-201ENST00000334258 SPATA1Q5VX52 437 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 TRIM22Q8IYM9 498 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 TRIML1Q8N9V2 468 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 UBN2Q6ZU65 1347 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 SYNRGQ9UMZ2 1314 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 PES1O00541 588 aaKnown RBP15.53■□□□□ 0.08
SYNE3-201ENST00000334258 RANBP6O60518 1105 aaKnown RBP15.53■□□□□ 0.08
SYNE3-201ENST00000334258 PTPREP23469 700 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 RASGRP2Q7LDG7 609 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 TICAM2Q86XR7 235 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 AFAP1L1Q8TED9 768 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 SMARCC1Q92922 1105 aaPredicted RBP15.53■□□□□ 0.08
SYNE3-201ENST00000334258 MED4Q9NPJ6 270 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 WWC3Q9ULE0 1092 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 MYO6Q9UM54 1294 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 PCDHB6Q9Y5E3 794 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 FXR1P51114 621 aaKnown RBP eCLIP15.53■□□□□ 0.08
SYNE3-201ENST00000334258 NKX2-3Q8TAU0 364 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 CTAGE1Q96RT6 745 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 DEF6Q9H4E7 631 aa15.53■□□□□ 0.08
SYNE3-201ENST00000334258 LAMA4Q16363 1823 aa15.52■□□□□ 0.08
SYNE3-201ENST00000334258 NR5A1Q13285 461 aa15.52■□□□□ 0.08
SYNE3-201ENST00000334258 HLFQ16534 295 aa15.52■□□□□ 0.08
SYNE3-201ENST00000334258 CMTR1Q8N1G2 835 aaKnown RBP15.52■□□□□ 0.08
SYNE3-201ENST00000334258 SEC31BQ9NQW1 1179 aa15.52■□□□□ 0.08
SYNE3-201ENST00000334258 FBXO2Q9UK22 296 aaPredicted RBP15.52■□□□□ 0.08
SYNE3-201ENST00000334258 TUBBP07437 444 aa15.52■□□□□ 0.07
SYNE3-201ENST00000334258 RILPL1Q5EBL4 403 aa15.52■□□□□ 0.07
SYNE3-201ENST00000334258 WASF1Q92558 559 aa15.52■□□□□ 0.07
SYNE3-201ENST00000334258 CSRNP2Q9H175 543 aa15.52■□□□□ 0.07
SYNE3-201ENST00000334258 VPS16Q9H269 839 aa15.52■□□□□ 0.07
SYNE3-201ENST00000334258 LMO7Q8WWI1 1683 aa15.52■□□□□ 0.07
SYNE3-201ENST00000334258 ENC1O14682 589 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 CDC25AP30304 524 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 GUCY1A2P33402 732 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 SARSP49591 514 aaKnown RBP15.51■□□□□ 0.07
SYNE3-201ENST00000334258 TOB1P50616 345 aaPredicted RBP15.51■□□□□ 0.07
SYNE3-201ENST00000334258 TMTC1Q8IUR5 882 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 STAMQ92783 540 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 NCAPGQ9BPX3 1015 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 CABP5Q9NP86 173 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 ERVV-2B6SEH9 535 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 ZMYND10O75800 440 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 SART3Q15020 963 aaKnown RBP15.51■□□□□ 0.07
SYNE3-201ENST00000334258 DDB1Q16531 1140 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 DNAJC21Q5F1R6 531 aaKnown RBP15.51■□□□□ 0.07
SYNE3-201ENST00000334258 MICALL1Q8N3F8 863 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 CNKSR2Q8WXI2 1034 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 CRACR2AQ9BSW2 395 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 ADD3Q9UEY8 706 aaKnown RBP15.51■□□□□ 0.07
SYNE3-201ENST00000334258 ZBTB1Q9Y2K1 713 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 NUP133Q8WUM0 1156 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 RIN2Q8WYP3 895 aaPredicted RBP15.51■□□□□ 0.07
SYNE3-201ENST00000334258 CAPZA3Q96KX2 299 aa15.51■□□□□ 0.07
SYNE3-201ENST00000334258 GYPCP04921 128 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 FAM43BQ6ZT52 329 aaPredicted RBP15.5■□□□□ 0.07
SYNE3-201ENST00000334258 TMEM87BQ96K49 555 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 KRT9P35527 623 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 CORO7P57737 925 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 NTRK3Q16288 839 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 MAP9Q49MG5 647 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 NT5DC1Q5TFE4 455 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 ZKSCAN3Q9BRR0 538 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 RABEP2Q9H5N1 569 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 CEP131Q9UPN4 1083 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 WDR19Q8NEZ3 1342 aa15.5■□□□□ 0.07
SYNE3-201ENST00000334258 PPFIA4O75335 1185 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 RPS6KA5O75582 802 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 MMP1P03956 469 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 CD44P16070 742 aaKnown RBP15.49■□□□□ 0.07
SYNE3-201ENST00000334258 CYP26C1Q6V0L0 522 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 ANKRD20A12PQ8NF67 263 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 CAGE1Q8TC20 777 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 EPSTI1Q96J88 318 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 NBPF3Q9H094 633 aa15.49■□□□□ 0.07
SYNE3-201ENST00000334258 ACTN4O43707 911 aaKnown RBP15.49■□□□□ 0.07
SYNE3-201ENST00000334258 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.49■□□□□ 0.07
SYNE3-201ENST00000334258 HINFPQ9BQA5 517 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms