RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 TBC1D10CQ8IV04 446 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 FAM76AQ8TAV0 307 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 RRP36Q96EU6 259 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 EPSTI1Q96J88 318 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 CRACR2AQ9BSW2 395 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 SELENOOQ9BVL4 669 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 NAA15Q9BXJ9 866 aaKnown RBP15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 CSRNP2Q9H175 543 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 GOLGA6AQ9NYA3 693 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 NWD2Q9ULI1 1742 aa15.2■□□□□ 0.02
CCDC88C-201ENST00000331194 TRIM29Q14134 588 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 ANKRD20A12PQ8NF67 263 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 ABHD10Q9NUJ1 306 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 ZMYM6O95789 1325 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 PDE2AO00408 941 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 EZH2Q15910 746 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 APOA5Q6Q788 366 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 NFXL1Q6ZNB6 911 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 CEP89Q96ST8 783 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 JPH2Q9BR39 696 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 FAM217BQ9NTX9 383 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 DACH1Q9UI36 760 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 SYNRGQ9UMZ2 1314 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 GNGT1P63211 74 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 SPATA1Q5VX52 437 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 HDAC7Q8WUI4 952 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 ZNF496Q96IT1 587 aaPredicted RBP15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 TAB2Q9NYJ8 693 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 ANGEL1Q9UNK9 670 aaKnown RBP15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 CAPN7Q9Y6W3 813 aa15.19■□□□□ 0.02
CCDC88C-201ENST00000331194 FAM205CA6NFA0 338 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 N4BP3O15049 544 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 KRT9P35527 623 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 NTRK3Q16288 839 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 ZNF790Q6PG37 636 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 TRAPPC11Q7Z392 1133 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 NOSTRINQ8IVI9 506 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 CTCFLQ8NI51 663 aaPredicted RBP15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 OXER1Q8TDS5 423 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 CARD10Q9BWT7 1032 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 MAPK8IP1Q9UQF2 711 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 PTPREP23469 700 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 FOXO4P98177 505 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 C2orf54Q08AI8 447 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 DIS3L2Q8IYB7 885 aaKnown RBP15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 VIPAS39Q9H9C1 493 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 CTNND2Q9UQB3 1225 aa15.18■□□□□ 0.02
CCDC88C-201ENST00000331194 GPAA1O43292 621 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 SHOX2O60902 331 aaPredicted RBP15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 INPP5BP32019 993 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 CUL4BQ13620 913 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 CNGA4Q8IV77 575 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 DUSP10Q9Y6W6 482 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 ZAP70P43403 619 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 TUBB2AQ13885 445 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 KRT31Q15323 416 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 TMTC1Q8IUR5 882 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 TUBB2BQ9BVA1 445 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 CAPS2Q9BXY5 557 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 GRIN2DO15399 1336 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 GOLGA6BA6NDN3 693 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 PPARAQ07869 468 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 CDKAL1Q5VV42 579 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 BLZF1Q9H2G9 400 aa15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 GNL3LQ9NVN8 582 aaKnown RBP15.17■□□□□ 0.02
CCDC88C-201ENST00000331194 GOLGA8AA7E2F4 631 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 ERCC5P28715 1186 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 CASP7P55210 303 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 FILIP1LQ4L180 1135 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 ARL8AQ96BM9 186 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 CD248Q9HCU0 757 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 SUFUQ9UMX1 484 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 SAR1BQ9Y6B6 198 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 EPN1Q9Y6I3 576 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 PPP1R3GB7ZBB8 358 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 SH2B2O14492 632 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 ZBTB43O43298 467 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 SLC7A5Q01650 507 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 CYP26C1Q6V0L0 522 aa15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 CCNI2Q6ZMN8 369 aaPredicted RBP15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 SND1Q7KZF4 910 aaKnown RBP eCLIP15.16■□□□□ 0.02
CCDC88C-201ENST00000331194 MATR3P43243 847 aaKnown RBP eCLIP15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 ATP1A2P50993 1020 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 PDCLQ13371 301 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 KCTD16Q68DU8 428 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 CPLX2Q6PUV4 134 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 SH2D3CQ8N5H7 860 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 CAGE1Q8TC20 777 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 ZKSCAN3Q9BRR0 538 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 CABP5Q9NP86 173 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 RCCD1A6NED2 376 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 NDUFA10O95299 355 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 ATP2B2Q01814 1243 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 CCDC122Q5T0U0 273 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 LRP10Q7Z4F1 713 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 GPIHBP1Q8IV16 184 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 EEF2KMTQ96G04 330 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 CPDO75976 1380 aa15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 PES1O00541 588 aaKnown RBP15.15■□□□□ 0.02
CCDC88C-201ENST00000331194 TUBB4BP68371 445 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms