RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 RIC1Q4ADV7 1423 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 CCT6AP40227 531 aaKnown RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 CTSWP56202 376 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 SLC20A2Q08357 652 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 FANCBQ8NB91 859 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 EPSTI1Q96J88 318 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 EPB41L4AQ9HCS5 686 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 ABCB6Q9NP58 842 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 AATFQ9NY61 560 aaKnown RBP eCLIP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 TULP1O00294 542 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 MAPK8IP2Q13387 824 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 SMYD4Q8IYR2 804 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 HELBQ8NG08 1087 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 SPATA20Q8TB22 786 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 GSDMAQ96QA5 445 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 RASSF4Q9H2L5 321 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 RNF41Q9H4P4 317 aaPredicted RBP16.56■□□□□ 0.24
SSBP3-201ENST00000326956 SEC31BQ9NQW1 1179 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 STRN4Q9NRL3 753 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 SLC4A4Q9Y6R1 1079 aa16.56■□□□□ 0.24
SSBP3-201ENST00000326956 TUBBP07437 444 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 CASP1P29466 404 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 WHAMMP3Q1A5X7 153 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 ZNF654Q8IZM8 581 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 GOLGA6L1Q8N7Z2 621 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 MSANTD4Q8NCY6 345 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 ACRBPQ8NEB7 543 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 PAGE5Q96GU1 130 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 PNKPQ96T60 521 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 CDC5LQ99459 802 aaKnown RBP16.55■□□□□ 0.24
SSBP3-201ENST00000326956 BRMS1Q9HCU9 246 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 TRMT112Q9UI30 125 aaKnown RBP16.55■□□□□ 0.24
SSBP3-201ENST00000326956 NUP188Q5SRE5 1749 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 A0A0U1RQJ8 604 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 IRS4O14654 1257 aaPredicted RBP16.55■□□□□ 0.24
SSBP3-201ENST00000326956 SEMA3EO15041 775 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 IVLP07476 585 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 C10orf67Q8IYJ2 551 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 SPATA5Q8NB90 893 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 ATRIPQ8WXE1 791 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 RAB21Q9UL25 225 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 CTNND2Q9UQB3 1225 aa16.55■□□□□ 0.24
SSBP3-201ENST00000326956 TCRBV5S4A2TA0A5A2 114 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 BMP15O95972 392 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 CD44P16070 742 aaKnown RBP16.54■□□□□ 0.24
SSBP3-201ENST00000326956 ARID4AP29374 1257 aaPredicted RBP16.54■□□□□ 0.24
SSBP3-201ENST00000326956 PUM3Q15397 648 aaKnown RBP16.54■□□□□ 0.24
SSBP3-201ENST00000326956 LPIN2Q92539 896 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 SYMPKQ92797 1274 aaKnown RBP16.54■□□□□ 0.24
SSBP3-201ENST00000326956 TMOD3Q9NYL9 352 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 STARD3NLO95772 234 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 SLC5A1P13866 664 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 KRT2P35908 639 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 USP5P45974 858 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 CYP26C1Q6V0L0 522 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 PRDM11Q9NQV5 511 aa16.54■□□□□ 0.24
SSBP3-201ENST00000326956 DDX60Q8IY21 1712 aaKnown RBP16.53■□□□□ 0.24
SSBP3-201ENST00000326956 GNAT2P19087 354 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 FXR1P51114 621 aaKnown RBP eCLIP16.53■□□□□ 0.24
SSBP3-201ENST00000326956 SPAG1Q07617 926 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 CUL4BQ13620 913 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 RRAGBQ5VZM2 374 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 GIGYF2Q6Y7W6 1299 aaKnown RBP16.53■□□□□ 0.24
SSBP3-201ENST00000326956 FERMT2Q96AC1 680 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 VPS16Q9H269 839 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 VPS54Q9P1Q0 977 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 L1RE1Q9UN81 338 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 CDHR2Q9BYE9 1310 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 GSG1L2A8MUP6 293 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 PRKAB2O43741 272 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 GYPCP04921 128 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 CDKAL1Q5VV42 579 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 APTXQ7Z2E3 356 aaKnown RBP16.53■□□□□ 0.24
SSBP3-201ENST00000326956 DNAJC10Q8IXB1 793 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 STAG1Q8WVM7 1258 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 FAN1Q9Y2M0 1017 aa16.53■□□□□ 0.24
SSBP3-201ENST00000326956 MYO1CO00159 1063 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 PBX1P40424 430 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 MST1RQ04912 1400 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 TSR1Q2NL82 804 aaKnown RBP16.52■□□□□ 0.24
SSBP3-201ENST00000326956 CCDC148Q8NFR7 591 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 STAMQ92783 540 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 MYO1AQ9UBC5 1043 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 MINDY4BA8MYZ0 360 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 PES1O00541 588 aaKnown RBP16.52■□□□□ 0.24
SSBP3-201ENST00000326956 PHACTR2O75167 634 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 WWC2Q6AWC2 1192 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 NLRP10Q86W26 655 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 SLF1Q9BQI6 1058 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 RNF26Q9BY78 433 aaPredicted RBP16.52■□□□□ 0.24
SSBP3-201ENST00000326956 SUGCTQ9HAC7 445 aa16.52■□□□□ 0.24
SSBP3-201ENST00000326956 WDR17Q8IZU2 1322 aa16.52■□□□□ 0.23
SSBP3-201ENST00000326956 VSNL1P62760 191 aa16.52■□□□□ 0.23
SSBP3-201ENST00000326956 CASP8Q14790 479 aa16.52■□□□□ 0.23
SSBP3-201ENST00000326956 NOM1Q5C9Z4 860 aaKnown RBP16.52■□□□□ 0.23
SSBP3-201ENST00000326956 VGLL2Q8N8G2 317 aa16.52■□□□□ 0.23
SSBP3-201ENST00000326956 MYO6Q9UM54 1294 aa16.52■□□□□ 0.23
SSBP3-201ENST00000326956 GLI3P10071 1580 aa16.51■□□□□ 0.23
SSBP3-201ENST00000326956 ITIH6Q6UXX5 1313 aa16.51■□□□□ 0.23
SSBP3-201ENST00000326956 PKD1L3Q7Z443 1732 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms