RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 GCKP35557 465 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 CHMP4BP1P59074 171 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ATP8B2P98198 1209 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 SEPT14Q6ZU15 432 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 SYNE4Q8N205 404 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 FERMT1Q9BQL6 677 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 LRRC2Q9BYS8 371 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 MTRF1LQ9UGC7 380 aaKnown RBP9.16□□□□□ -0.94
VPS41-202ENST00000310301 ZNF804BA4D1E1 1349 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 RFC1P35251 1148 aaPredicted RBP9.16□□□□□ -0.94
VPS41-202ENST00000310301 MFSD6Q6ZSS7 791 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 STXBP4Q6ZWJ1 553 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 TCEANC2Q96MN5 208 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ESYT1Q9BSJ8 1104 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ALG1Q9BT22 464 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 KLF18A0A0U1RQI7 1052 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 SEMA3EO15041 775 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 GNAQP50148 359 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 CCNA1P78396 465 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 DOK7Q18PE1 504 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.16□□□□□ -0.94
VPS41-202ENST00000310301 SLC10A4Q96EP9 437 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 COA1Q9GZY4 146 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 SLC4A4Q9Y6R1 1079 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 USP17L3A6NCW0 530 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 USP17L4A6NCW7 530 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ZNF853P0CG23 659 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 LMNB1P20700 586 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ZSCAN26Q16670 478 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 LRCH2Q5VUJ6 765 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 USP17L1Q7RTZ2 530 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 VCXQ9H320 206 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 FAM184BQ9ULE4 1060 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 ADAMTSL3P82987 1691 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 PSMA7O14818 248 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 STX17P56962 302 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 PDE1CQ14123 709 aaPredicted RBP9.16□□□□□ -0.94
VPS41-202ENST00000310301 STYK1Q6J9G0 422 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 CCDC110Q8TBZ0 833 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 VCX3BQ9H321 246 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 MCM9Q9NXL9 1143 aa9.16□□□□□ -0.94
VPS41-202ENST00000310301 MKRN1Q9UHC7 482 aaKnown RBP9.16□□□□□ -0.94
VPS41-202ENST00000310301 CYP19A1P11511 503 aaPredicted RBP9.15□□□□□ -0.94
VPS41-202ENST00000310301 ALDH3A1P30838 453 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 CCDC122Q5T0U0 273 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 TTC16Q8NEE8 873 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 RHPN1Q8TCX5 695 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 DHX58Q96C10 678 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 CNNM2Q9H8M5 875 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 NKIRAS1Q9NYS0 192 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 SPTLC2O15270 562 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 GJC1P36383 396 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 SLC9C2Q5TAH2 1124 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 ESR2Q92731 530 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 NAPGQ99747 312 aaPredicted RBP9.15□□□□□ -0.94
VPS41-202ENST00000310301 TSGA10Q9BZW7 698 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 PCDHB15Q9Y5E8 787 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 AKR1B15C9JRZ8 316 aaPredicted RBP9.15□□□□□ -0.94
VPS41-202ENST00000310301 HOXD10P28358 340 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 KRT23Q9C075 422 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 TMEM131LA2VDJ0 1609 aa9.15□□□□□ -0.94
VPS41-202ENST00000310301 CASQ2O14958 399 aaPredicted RBP9.15□□□□□ -0.95
VPS41-202ENST00000310301 Q6ZUG5 572 aa9.15□□□□□ -0.95
VPS41-202ENST00000310301 APOBEC3FQ8IUX4 373 aaKnown RBP9.15□□□□□ -0.95
VPS41-202ENST00000310301 GBP7Q8N8V2 638 aaPredicted RBP9.15□□□□□ -0.95
VPS41-202ENST00000310301 A6NNZ2 444 aa9.15□□□□□ -0.95
VPS41-202ENST00000310301 NFIXQ14938 502 aa9.15□□□□□ -0.95
VPS41-202ENST00000310301 PPP1R7Q15435 360 aa9.15□□□□□ -0.95
VPS41-202ENST00000310301 TUBB8Q3ZCM7 444 aa9.15□□□□□ -0.95
VPS41-202ENST00000310301 BCL2L12Q9HB09 334 aa9.15□□□□□ -0.95
VPS41-202ENST00000310301 USP17L8P0C7I0 530 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 CCDC38Q502W7 563 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 PODNQ7Z5L7 613 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 KIAA0825Q8IV33 1275 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 RNF168Q8IYW5 571 aaPredicted RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 TMTC2Q8N394 836 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 GPHNQ9NQX3 736 aaPredicted RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 STX8Q9UNK0 236 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 NEURL1BA8MQ27 555 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 OSBPP22059 807 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 RPAINQ86UA6 219 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 BICC1Q9H694 974 aaKnown RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 VAT1LQ9HCJ6 419 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 RBM8AQ9Y5S9 174 aaKnown RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 NEURL4Q96JN8 1562 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 HGSO14964 777 aaPredicted RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 RAD17O75943 681 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 ARL1P40616 181 aaPredicted RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 PPARDQ03181 441 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 GKAP1Q5VSY0 366 aaPredicted RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 ARHGEF2Q92974 986 aaKnown RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 CABS1Q96KC9 395 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 USP40Q9NVE5 1235 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 VWDEQ8N2E2 1590 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 A0A0G2JLW4 131 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 TBCAO75347 108 aaKnown RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 CFAP157Q5JU67 520 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 TRMT1LQ7Z2T5 733 aaKnown RBP9.14□□□□□ -0.95
VPS41-202ENST00000310301 CNGA4Q8IV77 575 aa9.14□□□□□ -0.95
VPS41-202ENST00000310301 BAIAP2L1Q9UHR4 511 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms