RNA–Protein interactions for RNA: ENST00000307859.4

TRIM40-205, Transcript of tripartite motif containing 40, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TRIM40, Length 1,640 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-205ENST00000307859 MRIQ9BWK5 157 aa13.8□□□□□ -0.2
TRIM40-205ENST00000307859 SLC26A6Q9BXS9 759 aa13.8□□□□□ -0.2
TRIM40-205ENST00000307859 GJB4Q9NTQ9 266 aa13.8□□□□□ -0.2
TRIM40-205ENST00000307859 TCP11L1Q9NUJ3 509 aa13.8□□□□□ -0.2
TRIM40-205ENST00000307859 RBM28Q9NW13 759 aaKnown RBP13.8□□□□□ -0.2
TRIM40-205ENST00000307859 ZNF219Q9P2Y4 722 aaPredicted RBP13.8□□□□□ -0.2
TRIM40-205ENST00000307859 BAZ2BQ9UIF8 2168 aaKnown RBP13.8□□□□□ -0.2
TRIM40-205ENST00000307859 PASKQ96RG2 1323 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 CCDC85CA6NKD9 419 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 F8W031 263 aaPredicted RBP13.79□□□□□ -0.2
TRIM40-205ENST00000307859 NMT2O60551 498 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 RASA1P20936 1047 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 MRE11P49959 708 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 HDLBPQ00341 1268 aaKnown RBP13.79□□□□□ -0.2
TRIM40-205ENST00000307859 TFAP4Q01664 338 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 SLC4A8Q2Y0W8 1093 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 CCDC93Q567U6 631 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 CCDC178Q5BJE1 867 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 DGKHQ86XP1 1220 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 TEKT1Q969V4 418 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 RNF26Q9BY78 433 aaPredicted RBP13.79□□□□□ -0.2
TRIM40-205ENST00000307859 ZNF287Q9HBT7 754 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 KCNQ5Q9NR82 932 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 RCOR1Q9UKL0 485 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 USP17L3A6NCW0 530 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 USP17L4A6NCW7 530 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 C21orf2O43822 256 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 WDHD1O75717 1129 aaPredicted RBP13.79□□□□□ -0.2
TRIM40-205ENST00000307859 DEXIO95424 95 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 FUT2Q10981 343 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 AOC3Q16853 763 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 CCDC183Q5T5S1 534 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 KRT40Q6A162 431 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 USP17L1Q7RTZ2 530 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 SLC44A5Q8NCS7 719 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 ZDHHC15Q96MV8 337 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 USP28Q96RU2 1077 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 GRPEL1Q9HAV7 217 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 MKNK2Q9HBH9 465 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 IL17RBQ9NRM6 502 aa13.79□□□□□ -0.2
TRIM40-205ENST00000307859 PLIN4Q96Q06 1357 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 COL4A5P29400 1685 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 KIF28PB7ZC32 967 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 CRKP46108 304 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 CDK8P49336 464 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 SCNN1DP51172 638 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 MAP2K1Q02750 393 aaPredicted RBP13.78□□□□□ -0.2
TRIM40-205ENST00000307859 APOBEC3HQ6NTF7 200 aaKnown RBP13.78□□□□□ -0.2
TRIM40-205ENST00000307859 CDC42EP5Q6NZY7 148 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 RTKN2Q8IZC4 609 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 PGBD1Q96JS3 809 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 PSMD1Q99460 953 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 MAP3K14Q99558 947 aa13.78□□□□□ -0.2
TRIM40-205ENST00000307859 TMEM88BA6NKF7 163 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 UBE2Q2LH0YL09 131 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 GUCY1A2P33402 732 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 TRIM29Q14134 588 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 MYSM1Q5VVJ2 828 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 LRSAM1Q6UWE0 723 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 TMTC3Q6ZXV5 915 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 ZNF444Q8N0Y2 327 aaPredicted RBP13.77□□□□□ -0.21
TRIM40-205ENST00000307859 DDX4Q9NQI0 724 aaKnown RBP13.77□□□□□ -0.21
TRIM40-205ENST00000307859 USP40Q9NVE5 1235 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 RTEL1Q9NZ71 1219 aa13.77□□□□□ -0.21
TRIM40-205ENST00000307859 CNTNAP5Q8WYK1 1306 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 SYCE3A1L190 88 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 PPIP5K2O43314 1243 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 PRPF3O43395 683 aaKnown RBP13.76□□□□□ -0.21
TRIM40-205ENST00000307859 TSPY3P0CV98 308 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 TSPY8P0CW00 308 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 XRCC6P12956 609 aaKnown RBP eCLIP13.76□□□□□ -0.21
TRIM40-205ENST00000307859 U2AF2P26368 475 aaKnown RBP eCLIP13.76□□□□□ -0.21
TRIM40-205ENST00000307859 GABPAQ06546 454 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 NEDD1Q8NHV4 660 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 CTCFLQ8NI51 663 aaPredicted RBP13.76□□□□□ -0.21
TRIM40-205ENST00000307859 FTOQ9C0B1 505 aaKnown RBP eCLIP13.76□□□□□ -0.21
TRIM40-205ENST00000307859 POLR3EQ9NVU0 708 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 MYO3BQ8WXR4 1341 aa13.76□□□□□ -0.21
TRIM40-205ENST00000307859 YDJCA8MPS7 323 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 PLEKHA8P1O95397 391 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 YEATS4O95619 227 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 NOVP48745 357 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 NASPP49321 788 aaPredicted RBP13.75□□□□□ -0.21
TRIM40-205ENST00000307859 KIAA0825Q8IV33 1275 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 CMTR1Q8N1G2 835 aaKnown RBP13.75□□□□□ -0.21
TRIM40-205ENST00000307859 OSBPL5Q9H0X9 879 aaPredicted RBP13.75□□□□□ -0.21
TRIM40-205ENST00000307859 VPS33BQ9H267 617 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 KAT14Q9H8E8 782 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 SERPINA10Q9UK55 444 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 RASSF10A6NK89 507 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 NFKBIEO00221 500 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 LETM1O95202 739 aaPredicted RBP13.75□□□□□ -0.21
TRIM40-205ENST00000307859 MMP1P03956 469 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 LIG1P18858 919 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 PICALMQ13492 652 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 PKN1Q16512 942 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 LDHDQ86WU2 507 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 PNMA1Q8ND90 353 aa13.75□□□□□ -0.21
TRIM40-205ENST00000307859 GOLGA6L4A6NEF3 574 aa13.74□□□□□ -0.21
TRIM40-205ENST00000307859 NPM3O75607 178 aaKnown RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms