RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SLC10A4Q96EP9 437 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CAPN9O14815 690 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 KIF4AO95239 1232 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 DIS3L2Q8IYB7 885 aaKnown RBP8.7□□□□□ -1.02
SCN9A-201ENST00000303354 PPM1EQ8WY54 764 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 TIGD1Q96MW7 591 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 PYM1Q9BRP8 204 aaKnown RBP8.7□□□□□ -1.02
SCN9A-201ENST00000303354 MEIS1O00470 390 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 OSBPP22059 807 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 KIF5AQ12840 1032 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 DCUN1D2Q6PH85 259 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 ARMC9Q7Z3E5 817 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CEP112Q8N8E3 955 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 ATRIPQ8WXE1 791 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CARD10Q9BWT7 1032 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 METTL14Q9HCE5 456 aaKnown RBP8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CGNQ9P2M7 1197 aaKnown RBP8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CCDC6Q16204 474 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CFAP157Q5JU67 520 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 PARD3BQ8TEW8 1205 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 IPO4Q8TEX9 1081 aaKnown RBP8.7□□□□□ -1.02
SCN9A-201ENST00000303354 PCIF1Q9H4Z3 704 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 ATP2B4P23634 1241 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 PPFIA1Q13136 1202 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 AOC3Q16853 763 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 PROSER3Q2NL68 480 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 DALRD3Q5D0E6 543 aaKnown RBP8.7□□□□□ -1.02
SCN9A-201ENST00000303354 APPBP2Q92624 585 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 CCDC127Q96BQ5 260 aa8.7□□□□□ -1.02
SCN9A-201ENST00000303354 TACC1O75410 805 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 SNX14Q9Y5W7 946 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 A0A087WWV3 80 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 ABCB4P21439 1286 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 LIG4P49917 911 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 ZEB2O60315 1214 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 IGSF3O75054 1194 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 ANGEL1Q9UNK9 670 aaKnown RBP8.69□□□□□ -1.02
SCN9A-201ENST00000303354 XRCC6P12956 609 aaKnown RBP eCLIP8.69□□□□□ -1.02
SCN9A-201ENST00000303354 TBC1D8BQ0IIM8 1120 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 ABCB5Q2M3G0 1257 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 SNAP23O00161 211 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 DIXDC1Q155Q3 683 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 GANCQ8TET4 914 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 AP5M1Q9H0R1 490 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 EIF4A1P60842 406 aaKnown RBP8.69□□□□□ -1.02
SCN9A-201ENST00000303354 CDAN1Q8IWY9 1227 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 KLHL7Q8IXQ5 586 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 POLD4Q9HCU8 107 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 CYP2D7A0A087X1C5 515 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 GOLGA6L9A6NEM1 432 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 PHKA1P46020 1223 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 ICA1Q05084 483 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 SLFNL1Q499Z3 407 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 MSANTD4Q8NCY6 345 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 TBX22Q9Y458 520 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 GPATCH8Q9UKJ3 1502 aaKnown RBP8.69□□□□□ -1.02
SCN9A-201ENST00000303354 SASH1O94885 1247 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 POLGP54098 1239 aaPredicted RBP8.69□□□□□ -1.02
SCN9A-201ENST00000303354 CEP57Q86XR8 500 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 DYNLL2Q96FJ2 89 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 RASAL2Q9UJF2 1139 aa8.69□□□□□ -1.02
SCN9A-201ENST00000303354 NEURL1BA8MQ27 555 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 NONOQ15233 471 aaKnown RBP eCLIP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CSGALNACT2Q8N6G5 542 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CTAGE1Q96RT6 745 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 AFF2P51816 1311 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 KDRP35968 1356 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 BICDL2A1A5D9 508 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 DEXIO95424 95 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 SEL1L2Q5TEA6 688 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 FMNL3Q8IVF7 1028 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 GSDMBQ8TAX9 411 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 KIFAP3Q92845 792 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PSTPIP2Q9H939 334 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 LAMC3Q9Y6N6 1575 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 POLR2MP0CAP2 368 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 BMS1Q14692 1282 aaKnown RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PPP2R5AQ15172 486 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 FBXO11Q86XK2 927 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 SOS1Q07889 1333 aaPredicted RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 NFX1Q12986 1120 aaKnown RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CUL4BQ13620 913 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 RPS6KC1Q96S38 1066 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 SLC5A4Q9NY91 659 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PPME1Q9Y570 386 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 K7ENM7 598 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 NR1I2O75469 434 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PNOCQ13519 176 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PLA2G4DQ86XP0 818 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 C7orf31Q8N865 590 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 SREK1Q8WXA9 508 aaKnown RBP8.68□□□□□ -1.02
SCN9A-201ENST00000303354 COA7Q96BR5 231 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CHMP6Q96FZ7 201 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 INPP5FQ9Y2H2 1132 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CTAGE15A4D2H0 777 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CTAGE8P0CG41 777 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 VPS41P49754 854 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 PRAMEF18Q5VWM3 479 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 SLFN13Q68D06 897 aa8.68□□□□□ -1.02
SCN9A-201ENST00000303354 CTAGE6Q86UF2 777 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms