RNA–Protein interactions for RNA: ENST00000299185.12

DEPDC4-201, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-201ENST00000299185 CDC45O75419 566 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 ADH1CP00326 375 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 CHMLP26374 656 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 CRKP46108 304 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 RBM5P52756 815 aaKnown RBP eCLIP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 MDM2Q00987 491 aaPredicted RBP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 NNTQ13423 1086 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 KIF4BQ2VIQ3 1234 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 C8orf34Q49A92 452 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 ZMYM1Q5SVZ6 1142 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 SLC9C2Q5TAH2 1124 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 VPS53Q5VIR6 699 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 CWC27Q6UX04 472 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 SH3RF3Q8TEJ3 882 aaPredicted RBP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 PURBQ96QR8 312 aaKnown RBP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 DIAPH3Q9NSV4 1193 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 AATFQ9NY61 560 aaKnown RBP eCLIP7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 MYH2Q9UKX2 1941 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 WDR90Q96KV7 1748 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 RFX7Q2KHR2 1363 aa7.83□□□□□ -1.16
DEPDC4-201ENST00000299185 GAKO14976 1311 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 CYP2D7A0A087X1C5 515 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 GDF11O95390 407 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 USP17L8P0C7I0 530 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 CYP2D6P10635 497 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 GSK3AP49840 483 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 HIRAP54198 1017 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 MAP3K12Q12852 859 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 NFIAQ12857 509 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 NBPF9Q3BBW0 867 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 TBC1D22AQ8WUA7 517 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 SDR42E1Q8WUS8 393 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 APPBP2Q92624 585 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 KLRG1Q96E93 195 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 CDK5RAP2Q96SN8 1893 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 VPS33BQ9H267 617 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 TDRD3Q9H7E2 651 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 EPB41L4AQ9HCS5 686 aaPredicted RBP7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 DDX4Q9NQI0 724 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 GPRC5DQ9NZD1 345 aa7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 CNOT7Q9UIV1 285 aaKnown RBP7.82□□□□□ -1.16
DEPDC4-201ENST00000299185 SIPA1L1O43166 1804 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 ADM5C9JUS6 153 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 GPAA1O43292 621 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 MFAP1P55081 439 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 WDR4P57081 412 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 RHBDL3P58872 404 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 ZNF280AP59817 542 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 PTH1RQ03431 593 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 FMR1Q06787 632 aaKnown RBP eCLIP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 PICALMQ13492 652 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 TNIP1Q15025 636 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 TTF1Q15361 905 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 EAPPQ56P03 285 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 APOBEC3HQ6NTF7 200 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 CDC42EP5Q6NZY7 148 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 MAPKAPK5Q8IW41 473 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 ZFPM1Q8IX07 1006 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 GPC2Q8N158 579 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 STK11IPQ8N1F8 1099 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 AGBL3Q8NEM8 1001 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 TEKT1Q969V4 418 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 ZBED3Q96IU2 234 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 PRMT6Q96LA8 375 aaPredicted RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 RIOK1Q9BRS2 568 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 ESYT1Q9BSJ8 1104 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 VEZTQ9HBM0 779 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 MYOZ2Q9NPC6 264 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 GGA3Q9NZ52 723 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 SAP30BPQ9UHR5 308 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 TAF6LQ9Y6J9 622 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 TLL2Q9Y6L7 1015 aa7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 GOLGB1Q14789 3259 aaKnown RBP7.81□□□□□ -1.16
DEPDC4-201ENST00000299185 CCDC171Q6TFL3 1326 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 MYO3BQ8WXR4 1341 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 SSC5DA1L4H1 1573 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 ECM29Q5VYK3 1845 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 LAMB1P07942 1786 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 MAGEB6P1A0A0J9YX57 407 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 GLTPD2A6NH11 291 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 FAM196BA6NMK8 535 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 TCP10L2B9ZVM9 353 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 MAN1A2O60476 641 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 TIMP2P16035 220 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 FKBP1AP62942 108 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 TCP10Q12799 353 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 MAP2K5Q13163 448 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 UBE3CQ15386 1083 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 PTPRNQ16849 979 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 PRAMEF18Q5VWM3 479 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 SPTY2D1Q68D10 685 aaPredicted RBP7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 TEX11Q8IYF3 940 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 ZGPATQ8N5A5 531 aaKnown RBP7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 BAP1Q92560 729 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 UNC93B1Q9H1C4 597 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 RRAGCQ9HB90 399 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 EVA1BQ9NVM1 165 aa7.8□□□□□ -1.16
DEPDC4-201ENST00000299185 FZD1Q9UP38 647 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms