RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 CTCFLQ8NI51 663 aaPredicted RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 EPSTI1Q96J88 318 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 ABHD10Q9NUJ1 306 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 WWC3Q9ULE0 1092 aa15.22■□□□□ 0.03
SKA3-201ENST00000298260 TTF2Q9UNY4 1162 aaKnown RBP15.22■□□□□ 0.03
SKA3-201ENST00000298260 EIF3HO15372 352 aaKnown RBP eCLIP15.21■□□□□ 0.03
SKA3-201ENST00000298260 SARSP49591 514 aaKnown RBP15.21■□□□□ 0.03
SKA3-201ENST00000298260 IMMTQ16891 758 aaKnown RBP15.21■□□□□ 0.03
SKA3-201ENST00000298260 GBP6Q6ZN66 633 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 CAGE1Q8TC20 777 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 GNL3LQ9NVN8 582 aaKnown RBP15.21■□□□□ 0.03
SKA3-201ENST00000298260 SYNRGQ9UMZ2 1314 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 STRCP1A6NGW2 1772 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 A0A087WZG4 1122 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 FAM205CA6NFA0 338 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 NDUFAB1O14561 156 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 RNMTO43148 476 aaKnown RBP15.21■□□□□ 0.03
SKA3-201ENST00000298260 SSBP05455 408 aaKnown RBP eCLIP15.21■□□□□ 0.03
SKA3-201ENST00000298260 KRT9P35527 623 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 TRAPPC11Q7Z392 1133 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 SLC26A6Q9BXS9 759 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 VIPAS39Q9H9C1 493 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 EHD2Q9NZN4 543 aa15.21■□□□□ 0.03
SKA3-201ENST00000298260 SHTN1A0MZ66 631 aa15.21■□□□□ 0.02
SKA3-201ENST00000298260 PES1O00541 588 aaKnown RBP15.21■□□□□ 0.02
SKA3-201ENST00000298260 N4BP3O15049 544 aa15.21■□□□□ 0.02
SKA3-201ENST00000298260 ANKRD18AQ8IVF6 992 aa15.21■□□□□ 0.02
SKA3-201ENST00000298260 AIDAQ96BJ3 306 aa15.21■□□□□ 0.02
SKA3-201ENST00000298260 CCDC85AQ96PX6 553 aaPredicted RBP15.21■□□□□ 0.02
SKA3-201ENST00000298260 DDX21Q9NR30 783 aaKnown RBP eCLIP15.21■□□□□ 0.02
SKA3-201ENST00000298260 DMGDHQ9UI17 866 aaKnown RBP15.21■□□□□ 0.02
SKA3-201ENST00000298260 CTNND2Q9UQB3 1225 aa15.21■□□□□ 0.02
SKA3-201ENST00000298260 APBA1Q02410 837 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 KRT28Q7Z3Y7 464 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 CSRNP2Q9H175 543 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 ZMYM6O95789 1325 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 RCCD1A6NED2 376 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 ACTN4O43707 911 aaKnown RBP15.2■□□□□ 0.02
SKA3-201ENST00000298260 PDE6BP35913 854 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 SCARF1Q14162 830 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 PPP2R5AQ15172 486 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 CCNI2Q6ZMN8 369 aaPredicted RBP15.2■□□□□ 0.02
SKA3-201ENST00000298260 CNPY4Q8N129 248 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 TSEN2Q8NCE0 465 aaKnown RBP15.2■□□□□ 0.02
SKA3-201ENST00000298260 PUS3Q9BZE2 481 aaKnown RBP15.2■□□□□ 0.02
SKA3-201ENST00000298260 BLZF1Q9H2G9 400 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 FBXO2Q9UK22 296 aaPredicted RBP15.2■□□□□ 0.02
SKA3-201ENST00000298260 SAR1BQ9Y6B6 198 aa15.2■□□□□ 0.02
SKA3-201ENST00000298260 FAM237AA0A1B0GTK4 181 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 B4E1Z4 1266 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 MYO1BO43795 1136 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 FNTAP49354 379 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 PPFIA1Q13136 1202 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 KRT31Q15323 416 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 TTMPQ5BVD1 217 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 CCDC122Q5T0U0 273 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 RNF187Q5TA31 235 aaPredicted RBP15.19■□□□□ 0.02
SKA3-201ENST00000298260 UBN2Q6ZU65 1347 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 PRPF38AQ8NAV1 312 aaKnown RBP15.19■□□□□ 0.02
SKA3-201ENST00000298260 NCOA7Q8NI08 942 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 SMCR8Q8TEV9 937 aaPredicted RBP15.19■□□□□ 0.02
SKA3-201ENST00000298260 ANKRD24Q8TF21 1146 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 NAA15Q9BXJ9 866 aaKnown RBP15.19■□□□□ 0.02
SKA3-201ENST00000298260 LACRTQ9GZZ8 138 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 SLC24A3Q9HC58 644 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 TOPAZ1Q8N9V7 1692 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 KRT14P02533 472 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 SEC24CP53992 1094 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 GUCY1A3Q02108 690 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 SPATA1Q5VX52 437 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 CNGA4Q8IV77 575 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 OTUD6BQ8N6M0 293 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 OXER1Q8TDS5 423 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 ZKSCAN4Q969J2 545 aaPredicted RBP15.19■□□□□ 0.02
SKA3-201ENST00000298260 JAKMIP2Q96AA8 810 aa15.19■□□□□ 0.02
SKA3-201ENST00000298260 MACROD2A1Z1Q3 448 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 GPTP24298 496 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 ATG9AQ7Z3C6 839 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 TBC1D10CQ8IV04 446 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 CABS1Q96KC9 395 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 JADE2Q9NQC1 790 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 EIF4ENIF1Q9NRA8 985 aaKnown RBP15.18■□□□□ 0.02
SKA3-201ENST00000298260 EPN1Q9Y6I3 576 aaPredicted RBP15.18■□□□□ 0.02
SKA3-201ENST00000298260 PXDNQ92626 1479 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 ADORA1P30542 326 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 IARSP41252 1262 aaKnown RBP15.18■□□□□ 0.02
SKA3-201ENST00000298260 CUL4BQ13620 913 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 TRIM29Q14134 588 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 NFXL1Q6ZNB6 911 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 GIMAP7Q8NHV1 300 aa15.18■□□□□ 0.02
SKA3-201ENST00000298260 N4BP2L2Q92802 583 aaPredicted RBP15.18■□□□□ 0.02
SKA3-201ENST00000298260 CCDC196A0A1B0GTZ2 297 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 ZNF213O14771 459 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 NDUFA10O95299 355 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 PAX7P23759 505 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 CXCR5P32302 372 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 CYP27A1Q02318 531 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 APOA5Q6Q788 366 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 TMTC1Q8IUR5 882 aa15.17■□□□□ 0.02
SKA3-201ENST00000298260 DIS3L2Q8IYB7 885 aaKnown RBP15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms