RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 RBL2Q08999 1139 aa27.8■■■□□ 2.04
SPTSSA-201ENST00000298130 NR1I3Q14994 352 aa27.8■■■□□ 2.04
SPTSSA-201ENST00000298130 IFIT1BQ5T764 474 aaKnown RBP27.8■■■□□ 2.04
SPTSSA-201ENST00000298130 BICDL1Q6ZP65 573 aa27.8■■■□□ 2.04
SPTSSA-201ENST00000298130 PAGE5Q96GU1 130 aa27.8■■■□□ 2.04
SPTSSA-201ENST00000298130 COL4A1P02462 1669 aa27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 FAM47AQ5JRC9 791 aa27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 RGS22Q8NE09 1264 aa27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 ZSCAN10Q96SZ4 725 aaPredicted RBP27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 XIRP1Q702N8 1843 aaKnown RBP27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 TFRCP02786 760 aaKnown RBP27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 CCT6AP40227 531 aaKnown RBP27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 DPYDQ12882 1025 aa27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 DHX8Q14562 1220 aaKnown RBP27.79■■■□□ 2.04
SPTSSA-201ENST00000298130 KRT2P35908 639 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 BMS1Q14692 1282 aaKnown RBP27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 CCDC87Q9NVE4 849 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 POLR3GO15318 223 aaPredicted RBP27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 STX10O60499 249 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 PLA2G4AP47712 749 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 ITPK1Q13572 414 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 TMTC2Q8N394 836 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 CEP131Q9UPN4 1083 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 MAPK8IP1Q9UQF2 711 aa27.78■■■□□ 2.04
SPTSSA-201ENST00000298130 TMCO3Q6UWJ1 677 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 CCDC24Q8N4L8 307 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 ZNF384Q8TF68 577 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 DACH1Q9UI36 760 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 CAMTA2O94983 1202 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 KLRK1P26718 216 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 RAD9BQ6WBX8 426 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 IGSF22Q8N9C0 903 aa27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 CCDC12Q8WUD4 166 aaPredicted RBP27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 ZNF579Q8NAF0 562 aaKnown RBP27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 RNF26Q9BY78 433 aaPredicted RBP27.77■■■□□ 2.04
SPTSSA-201ENST00000298130 NTSR2O95665 410 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 FUT2Q10981 343 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 RIOK1Q9BRS2 568 aaKnown RBP27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 SYNRGQ9UMZ2 1314 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 USP17L12C9JPN9 530 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 USP17L21D6R901 530 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 PPP2R3AQ06190 1150 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 APTXQ7Z2E3 356 aaKnown RBP27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 PHF20Q9BVI0 1012 aa27.76■■■□□ 2.03
SPTSSA-201ENST00000298130 CHD4Q14839 1912 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 ABL1P00519 1130 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 PTGDRQ13258 359 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 CATIPQ7Z7H3 387 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 CTNND2Q9UQB3 1225 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 MTMR7Q9Y216 660 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 AKR1B15C9JRZ8 316 aaPredicted RBP27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 CCDC34Q96HJ3 373 aa27.75■■■□□ 2.03
SPTSSA-201ENST00000298130 A0A1B0GTH6 734 aa27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 CYP2D6P10635 497 aa27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 PIK3AP1Q6ZUJ8 805 aa27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 SPATA20Q8TB22 786 aa27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 KIFC2Q96AC6 838 aa27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 ZCCHC17Q9NP64 241 aaKnown RBP27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 MCM7P33993 719 aa27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 AATFQ9NY61 560 aaKnown RBP eCLIP27.74■■■□□ 2.03
SPTSSA-201ENST00000298130 CASP14P31944 242 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 MAP3K9P80192 1104 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 EFCAB8A8MWE9 144 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 SASH3O75995 380 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 TUBB4AP04350 444 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 XBP1P17861 261 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 TROAPQ12815 778 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 ERFEQ4G0M1 354 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 FCHSD1Q86WN1 690 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 PUF60Q9UHX1 559 aaKnown RBP27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 NID2Q14112 1375 aa27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 COL1A1P02452 1464 aaPredicted RBP27.73■■■□□ 2.03
SPTSSA-201ENST00000298130 CUL4BQ13620 913 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 KANK3Q6NY19 840 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 SRBD1Q8N5C6 995 aaKnown RBP27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 MRFAP1Q9Y605 127 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 MYO1BO43795 1136 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 NPY5RQ15761 445 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 TTC38Q5R3I4 469 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 PPFIBP1Q86W92 1011 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 TRIML1Q8N9V2 468 aa27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 NOL10Q9BSC4 688 aaKnown RBP27.72■■■□□ 2.03
SPTSSA-201ENST00000298130 LOC102724428A0A0B4J2F2 783 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 PPP1R3GB7ZBB8 358 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 ZRANB2O95218 330 aaKnown RBP eCLIP27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 SIK1P57059 783 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 SPATA1Q5VX52 437 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 ELOA2Q8IYF1 753 aaPredicted RBP27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 VPS16Q9H269 839 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 TFCP2L1Q9NZI6 479 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 MYH2Q9UKX2 1941 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 FXR1P51114 621 aaKnown RBP eCLIP27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 CTR9Q6PD62 1173 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 ARGLU1Q9NWB6 273 aaPredicted RBP27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 RNF225M0QZC1 329 aaPredicted RBP27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 ERCC5P28715 1186 aaPredicted RBP27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 ACRBPQ8NEB7 543 aa27.71■■■□□ 2.03
SPTSSA-201ENST00000298130 RTL9Q8NET4 1388 aa27.7■■■□□ 2.03
SPTSSA-201ENST00000298130 ADAMTS2O95450 1211 aa27.7■■■□□ 2.02
SPTSSA-201ENST00000298130 IQCA1Q86XH1 822 aa27.7■■■□□ 2.02
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms