RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 GPR101Q96P66 508 aaPredicted RBP27.5■■□□□ 1.99
TRIM54-201ENST00000296098 SRPRBQ9Y5M8 271 aaKnown RBP27.5■■□□□ 1.99
TRIM54-201ENST00000296098 MORC2Q9Y6X9 1032 aaPredicted RBP27.5■■□□□ 1.99
TRIM54-201ENST00000296098 IKBKBO14920 756 aa27.5■■□□□ 1.99
TRIM54-201ENST00000296098 ATP2B1P20020 1258 aa27.5■■□□□ 1.99
TRIM54-201ENST00000296098 GRIN1Q05586 938 aa27.5■■□□□ 1.99
TRIM54-201ENST00000296098 NOL10Q9BSC4 688 aaKnown RBP27.5■■□□□ 1.99
TRIM54-201ENST00000296098 HOOK1Q9UJC3 728 aaKnown RBP27.5■■□□□ 1.99
TRIM54-201ENST00000296098 TRIM75PA6NK02 468 aa27.49■■□□□ 1.99
TRIM54-201ENST00000296098 NEMFO60524 1076 aa27.49■■□□□ 1.99
TRIM54-201ENST00000296098 BAG3O95817 575 aa27.49■■□□□ 1.99
TRIM54-201ENST00000296098 DIXDC1Q155Q3 683 aa27.49■■□□□ 1.99
TRIM54-201ENST00000296098 SLC4A8Q2Y0W8 1093 aa27.49■■□□□ 1.99
TRIM54-201ENST00000296098 SRBD1Q8N5C6 995 aaKnown RBP27.49■■□□□ 1.99
TRIM54-201ENST00000296098 PRIMPOLQ96LW4 560 aa27.49■■□□□ 1.99
TRIM54-201ENST00000296098 UFL1O94874 794 aa27.48■■□□□ 1.99
TRIM54-201ENST00000296098 SERPINB2P05120 415 aa27.48■■□□□ 1.99
TRIM54-201ENST00000296098 NCAPHQ15003 741 aa27.48■■□□□ 1.99
TRIM54-201ENST00000296098 ISM2Q6H9L7 571 aa27.48■■□□□ 1.99
TRIM54-201ENST00000296098 RBM17Q96I25 401 aaKnown RBP27.48■■□□□ 1.99
TRIM54-201ENST00000296098 FAM205CA6NFA0 338 aa27.48■■□□□ 1.99
TRIM54-201ENST00000296098 AMOTL1Q8IY63 956 aa27.48■■□□□ 1.99
TRIM54-201ENST00000296098 LDHCP07864 332 aa27.47■■□□□ 1.99
TRIM54-201ENST00000296098 ATP2B4P23634 1241 aa27.47■■□□□ 1.99
TRIM54-201ENST00000296098 GRIK5Q16478 980 aa27.47■■□□□ 1.99
TRIM54-201ENST00000296098 RCSD1Q6JBY9 416 aa27.47■■□□□ 1.99
TRIM54-201ENST00000296098 LRRC8AQ8IWT6 810 aa27.47■■□□□ 1.99
TRIM54-201ENST00000296098 PPP4CP60510 307 aa27.46■■□□□ 1.99
TRIM54-201ENST00000296098 SLC27A3Q5K4L6 730 aa27.46■■□□□ 1.99
TRIM54-201ENST00000296098 KIF5BP33176 963 aa27.46■■□□□ 1.99
TRIM54-201ENST00000296098 EARS2Q5JPH6 523 aaKnown RBP27.46■■□□□ 1.99
TRIM54-201ENST00000296098 KAT14Q9H8E8 782 aa27.46■■□□□ 1.99
TRIM54-201ENST00000296098 GGA1Q9UJY5 639 aa27.46■■□□□ 1.99
TRIM54-201ENST00000296098 SMC2O95347 1197 aa27.45■■□□□ 1.99
TRIM54-201ENST00000296098 BMP15O95972 392 aa27.45■■□□□ 1.99
TRIM54-201ENST00000296098 SCG2P13521 617 aa27.45■■□□□ 1.99
TRIM54-201ENST00000296098 TFAP4Q01664 338 aa27.45■■□□□ 1.99
TRIM54-201ENST00000296098 TNFRSF25Q93038 417 aa27.45■■□□□ 1.99
TRIM54-201ENST00000296098 PCDHA5Q9Y5H7 936 aa27.45■■□□□ 1.99
TRIM54-201ENST00000296098 CDK5RAP2Q96SN8 1893 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 POLR2DO15514 142 aaKnown RBP27.45■■□□□ 1.98
TRIM54-201ENST00000296098 MDM2Q00987 491 aaPredicted RBP27.45■■□□□ 1.98
TRIM54-201ENST00000296098 NPY5RQ15761 445 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 OLFM4Q6UX06 510 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 FILIP1Q7Z7B0 1213 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 DYNLL2Q96FJ2 89 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 CSRNP2Q9H175 543 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 CD209Q9NNX6 404 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 IFNKQ9P0W0 207 aa27.45■■□□□ 1.98
TRIM54-201ENST00000296098 MYL5Q02045 173 aa27.44■■□□□ 1.98
TRIM54-201ENST00000296098 POSTNQ15063 836 aa27.44■■□□□ 1.98
TRIM54-201ENST00000296098 DGKHQ86XP1 1220 aa27.44■■□□□ 1.98
TRIM54-201ENST00000296098 CERS3Q8IU89 383 aa27.44■■□□□ 1.98
TRIM54-201ENST00000296098 MYRIPQ8NFW9 859 aa27.44■■□□□ 1.98
TRIM54-201ENST00000296098 RTFDC1Q9BY42 306 aaPredicted RBP27.44■■□□□ 1.98
TRIM54-201ENST00000296098 XPO4Q9C0E2 1151 aaKnown RBP27.44■■□□□ 1.98
TRIM54-201ENST00000296098 DDX60LQ5H9U9 1706 aaKnown RBP27.43■■□□□ 1.98
TRIM54-201ENST00000296098 FOXN1O15353 648 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 HSPA1LP34931 641 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 GSDMDP57764 484 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 FOXP4Q8IVH2 680 aaPredicted RBP27.43■■□□□ 1.98
TRIM54-201ENST00000296098 TGFBRAP1Q8WUH2 860 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 IMPACTQ9P2X3 320 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 SERTAD1Q9UHV2 236 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 LRRC37AA6NMS7 1700 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 IL1R1P14778 569 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 ARID5BQ14865 1188 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 PFKFB3Q16875 520 aaPredicted RBP27.43■■□□□ 1.98
TRIM54-201ENST00000296098 CCDC178Q5BJE1 867 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 MKNK2Q9HBH9 465 aa27.43■■□□□ 1.98
TRIM54-201ENST00000296098 ANKS1AQ92625 1134 aa27.42■■□□□ 1.98
TRIM54-201ENST00000296098 IL17RBQ9NRM6 502 aa27.42■■□□□ 1.98
TRIM54-201ENST00000296098 DYNC1I1O14576 645 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 LMOD1P29536 600 aaPredicted RBP27.41■■□□□ 1.98
TRIM54-201ENST00000296098 KANK3Q6NY19 840 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 PNMA1Q8ND90 353 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 OSBPL5Q9H0X9 879 aaPredicted RBP27.41■■□□□ 1.98
TRIM54-201ENST00000296098 ACTN4O43707 911 aaKnown RBP27.41■■□□□ 1.98
TRIM54-201ENST00000296098 BBOX1O75936 387 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 TTC38Q5R3I4 469 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 FERMT2Q96AC1 680 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 HSD3B7Q9H2F3 369 aa27.41■■□□□ 1.98
TRIM54-201ENST00000296098 BTDP43251 543 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 NLRP5P59047 1200 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 DDR1Q08345 913 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 LTBP1Q14766 1721 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 PODXL2Q9NZ53 605 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 PRR29P0C7W0 189 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 TSPY3P0CV98 308 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 TSPY8P0CW00 308 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 HOXA10P31260 410 aaPredicted RBP27.4■■□□□ 1.98
TRIM54-201ENST00000296098 NT5DC1Q5TFE4 455 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 MAPKAPK5Q8IW41 473 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 MAN1B1Q9UKM7 699 aa27.4■■□□□ 1.98
TRIM54-201ENST00000296098 BRWD3Q6RI45 1802 aa27.39■■□□□ 1.98
TRIM54-201ENST00000296098 FANCCQ00597 558 aa27.39■■□□□ 1.98
TRIM54-201ENST00000296098 USP49Q70CQ1 688 aa27.39■■□□□ 1.98
TRIM54-201ENST00000296098 PDILTQ8N807 584 aa27.39■■□□□ 1.98
TRIM54-201ENST00000296098 SMARCE1Q969G3 411 aa27.39■■□□□ 1.98
TRIM54-201ENST00000296098 TCP11L1Q9NUJ3 509 aa27.39■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms