RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 PPFIA3O75145 1194 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 SSRP1Q08945 709 aaKnown RBP16.42■□□□□ 0.22
SS18-201ENST00000269137 MCTP1Q6DN14 999 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 NBPF11Q86T75 865 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 PNMA1Q8ND90 353 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 PHKBQ93100 1093 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 DNAJC18Q9H819 358 aa16.42■□□□□ 0.22
SS18-201ENST00000269137 WNT10BO00744 389 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 AKR1B1P15121 316 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 GMPSP49915 693 aaPredicted RBP16.41■□□□□ 0.22
SS18-201ENST00000269137 FAM83AQ86UY5 434 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 TRIM22Q8IYM9 498 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 FBXO18Q8NFZ0 1043 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 CTCFLQ8NI51 663 aaPredicted RBP16.41■□□□□ 0.22
SS18-201ENST00000269137 WASF1Q92558 559 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 CEP95Q96GE4 821 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 C8orf76Q96K31 380 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 TMEM47Q9BQJ4 181 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 ZSCAN16Q9H4T2 348 aaPredicted RBP16.41■□□□□ 0.22
SS18-201ENST00000269137 SBF1O95248 1867 aa16.41■□□□□ 0.22
SS18-201ENST00000269137 CLRN2A0PK11 232 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 TOP1P11387 765 aaKnown RBP16.4■□□□□ 0.22
SS18-201ENST00000269137 KIF5BP33176 963 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 FUT2Q10981 343 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 TATDN1Q6P1N9 297 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 RNF26Q9BY78 433 aaPredicted RBP16.4■□□□□ 0.22
SS18-201ENST00000269137 MTMR4Q9NYA4 1195 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 STX8Q9UNK0 236 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 TCHHQ07283 1943 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 GREB1LQ9C091 1923 aaPredicted RBP16.4■□□□□ 0.22
SS18-201ENST00000269137 TCP10L2B9ZVM9 353 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 RESTQ13127 1097 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 PPP4R3BQ5MIZ7 849 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 TMTC3Q6ZXV5 915 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 CHAMP1Q96JM3 812 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 ALG1Q9BT22 464 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 SLC26A6Q9BXS9 759 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 GJA3Q9Y6H8 435 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 ZNF541Q9H0D2 1346 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 CNTNAP1P78357 1384 aa16.4■□□□□ 0.22
SS18-201ENST00000269137 SHTN1A0MZ66 631 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 DEXIO95424 95 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 GRM4Q14833 912 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 NBPF9Q3BBW0 867 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 FERMT3Q86UX7 667 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 MICALL2Q8IY33 904 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 TRIM34Q9BYJ4 488 aa16.39■□□□□ 0.21
SS18-201ENST00000269137 HERC5Q9UII4 1024 aaKnown RBP16.39■□□□□ 0.21
SS18-201ENST00000269137 CNOT7Q9UIV1 285 aaKnown RBP16.39■□□□□ 0.21
SS18-201ENST00000269137 CSRNP1Q96S65 589 aa16.38■□□□□ 0.21
SS18-201ENST00000269137 VEZTQ9HBM0 779 aa16.38■□□□□ 0.21
SS18-201ENST00000269137 LMBRD1Q9NUN5 540 aa16.38■□□□□ 0.21
SS18-201ENST00000269137 PRPF3O43395 683 aaKnown RBP16.38■□□□□ 0.21
SS18-201ENST00000269137 GNAQP50148 359 aa16.38■□□□□ 0.21
SS18-201ENST00000269137 SKOR2Q2VWA4 1001 aaPredicted RBP16.38■□□□□ 0.21
SS18-201ENST00000269137 CERKLQ49MI3 558 aaPredicted RBP16.38■□□□□ 0.21
SS18-201ENST00000269137 GPC2Q8N158 579 aa16.38■□□□□ 0.21
SS18-201ENST00000269137 TMEM87AQ8NBN3 555 aa16.38■□□□□ 0.21
SS18-201ENST00000269137 TRAK2O60296 914 aa16.37■□□□□ 0.21
SS18-201ENST00000269137 PLEKHA8P1O95397 391 aa16.37■□□□□ 0.21
SS18-201ENST00000269137 TTLL1O95922 423 aa16.37■□□□□ 0.21
SS18-201ENST00000269137 YBX3P16989 372 aaKnown RBP eCLIP16.37■□□□□ 0.21
SS18-201ENST00000269137 FOXD4L6Q3SYB3 417 aaPredicted RBP16.37■□□□□ 0.21
SS18-201ENST00000269137 FOXD4L3Q6VB84 417 aaPredicted RBP16.37■□□□□ 0.21
SS18-201ENST00000269137 CMTR1Q8N1G2 835 aaKnown RBP16.37■□□□□ 0.21
SS18-201ENST00000269137 SRBD1Q8N5C6 995 aaKnown RBP16.37■□□□□ 0.21
SS18-201ENST00000269137 MYH6P13533 1939 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 PALM3A6NDB9 673 aaPredicted RBP16.36■□□□□ 0.21
SS18-201ENST00000269137 TBC1D12O60347 775 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 PRPF40AO75400 957 aaKnown RBP16.36■□□□□ 0.21
SS18-201ENST00000269137 SLURP2P0DP57 97 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 FOSBP53539 338 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 AKAP17AQ02040 695 aaKnown RBP16.36■□□□□ 0.21
SS18-201ENST00000269137 GUCY1B3Q02153 619 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 DNM1Q05193 864 aaKnown RBP16.36■□□□□ 0.21
SS18-201ENST00000269137 CCDC82Q8N4S0 544 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 AIFM3Q96NN9 605 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 LZTS2Q9BRK4 669 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 RBM27Q9P2N5 1060 aaKnown RBP16.36■□□□□ 0.21
SS18-201ENST00000269137 PGAP2Q9UHJ9 254 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 MAD2L2Q9UI95 211 aa16.36■□□□□ 0.21
SS18-201ENST00000269137 FAM196BA6NMK8 535 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 H7C1D1 291 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 EGFRP00533 1210 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 GUCY1A2P33402 732 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 TNNI2P48788 182 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 TNFAIP1Q13829 316 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 OTUD7BQ6GQQ9 843 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 KANSL2Q9H9L4 492 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 CNTNAP5Q8WYK1 1306 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 MPHOSPH10O00566 681 aaKnown RBP16.35■□□□□ 0.21
SS18-201ENST00000269137 KRT85P78386 507 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 MAP3K10Q02779 954 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 TRIM29Q14134 588 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 CSPP1Q1MSJ5 1256 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 KRT40Q6A162 431 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 ATL3Q6DD88 541 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 TMEM179Q6ZVK1 233 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 SAMD7Q7Z3H4 446 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 TMEM39BQ9GZU3 492 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms