RNA–Protein interactions for RNA: ENST00000266589.10

SCAF11-201, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 5

Gene SCAF11, Length 2,084 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-201ENST00000266589 NEDD1Q8NHV4 660 aa13.41□□□□□ -0.26
SCAF11-201ENST00000266589 UPF1Q92900 1129 aaKnown RBP eCLIP13.41□□□□□ -0.26
SCAF11-201ENST00000266589 VPS33BQ9H267 617 aa13.41□□□□□ -0.26
SCAF11-201ENST00000266589 STX8Q9UNK0 236 aa13.41□□□□□ -0.26
SCAF11-201ENST00000266589 MYO3BQ8WXR4 1341 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 GOLGA6L4A6NEF3 574 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 HLA-DOAP06340 250 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 GNL2Q13823 731 aaKnown RBP13.4□□□□□ -0.26
SCAF11-201ENST00000266589 RSBN1LQ6PCB5 846 aaPredicted RBP13.4□□□□□ -0.26
SCAF11-201ENST00000266589 GAS2L3Q86XJ1 694 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 SERPINB13Q9UIV8 391 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 CNTNAP5Q8WYK1 1306 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 SIPA1L1O43166 1804 aa13.4□□□□□ -0.26
SCAF11-201ENST00000266589 GOLGB1Q14789 3259 aaKnown RBP13.4□□□□□ -0.26
SCAF11-201ENST00000266589 PLIN4Q96Q06 1357 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 PSDA5PKW4 1024 aaPredicted RBP13.4□□□□□ -0.27
SCAF11-201ENST00000266589 PSMD14O00487 310 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 KIF5BP33176 963 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 CFAP100Q494V2 611 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 L1TD1Q5T7N2 865 aaKnown RBP13.4□□□□□ -0.27
SCAF11-201ENST00000266589 MYSM1Q5VVJ2 828 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 NIM1KQ8IY84 436 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 SGIP1Q9BQI5 828 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 TMEM47Q9BQJ4 181 aa13.4□□□□□ -0.27
SCAF11-201ENST00000266589 ISY1Q9ULR0 285 aaKnown RBP13.4□□□□□ -0.27
SCAF11-201ENST00000266589 SYCE3A1L190 88 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 PRPF3O43395 683 aaKnown RBP13.39□□□□□ -0.27
SCAF11-201ENST00000266589 MMP1P03956 469 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 TCP10Q12799 353 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 ZFPM1Q8IX07 1006 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 SRBD1Q8N5C6 995 aaKnown RBP13.39□□□□□ -0.27
SCAF11-201ENST00000266589 MAP3K14Q99558 947 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 IDI2Q9BXS1 227 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 FAM198AQ9UFP1 575 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 SWAP70Q9UH65 585 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 RCOR1Q9UKL0 485 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 KCNJ14Q9UNX9 436 aa13.39□□□□□ -0.27
SCAF11-201ENST00000266589 hCG_1642624A0A1W2PR95 340 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 VIL1P09327 827 aaKnown RBP13.38□□□□□ -0.27
SCAF11-201ENST00000266589 GRM4Q14833 912 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 PKN1Q16512 942 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 CCDC183Q5T5S1 534 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 CEP95Q96GE4 821 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 PGBD1Q96JS3 809 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 TAOK3Q9H2K8 898 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 TDRD3Q9H7E2 651 aaKnown RBP13.38□□□□□ -0.27
SCAF11-201ENST00000266589 ZNRF3Q9ULT6 936 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 V9GY48 417 aaPredicted RBP13.38□□□□□ -0.27
SCAF11-201ENST00000266589 U2AF2P26368 475 aaKnown RBP eCLIP13.38□□□□□ -0.275e-8■■■■■ 30.4
SCAF11-201ENST00000266589 SAFBQ15424 915 aaKnown RBP eCLIP13.38□□□□□ -0.27
SCAF11-201ENST00000266589 EHD4Q9H223 541 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 DHX36Q9H2U1 1008 aaKnown RBP13.38□□□□□ -0.27
SCAF11-201ENST00000266589 RTEL1Q9NZ71 1219 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 MTMR7Q9Y216 660 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 CD2APQ9Y5K6 639 aa13.38□□□□□ -0.27
SCAF11-201ENST00000266589 AKR1B1P15121 316 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 XBP1P17861 261 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 SHMT1P34896 483 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 DIS3L2Q8IYB7 885 aaKnown RBP13.37□□□□□ -0.27
SCAF11-201ENST00000266589 BICD2Q8TD16 824 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 PRMT6Q96LA8 375 aaPredicted RBP13.37□□□□□ -0.27
SCAF11-201ENST00000266589 GMLQ99445 158 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.37□□□□□ -0.27
SCAF11-201ENST00000266589 POLR3EQ9NVU0 708 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 HDAC9Q9UKV0 1011 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 ZBTB12Q9Y330 459 aaPredicted RBP13.37□□□□□ -0.27
SCAF11-201ENST00000266589 CLIC4Q9Y696 253 aa13.37□□□□□ -0.27
SCAF11-201ENST00000266589 GREB1LQ9C091 1923 aaPredicted RBP13.37□□□□□ -0.27
SCAF11-201ENST00000266589 DDTLA6NHG4 134 aaPredicted RBP13.36□□□□□ -0.27
SCAF11-201ENST00000266589 NPM3O75607 178 aaKnown RBP13.36□□□□□ -0.27
SCAF11-201ENST00000266589 PTGER2P43116 358 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 ZSCAN29Q8IWY8 852 aaPredicted RBP13.36□□□□□ -0.27
SCAF11-201ENST00000266589 STAG2Q8N3U4 1231 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 GRPEL1Q9HAV7 217 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 VPS54Q9P1Q0 977 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 MAD2L2Q9UI95 211 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 BTBD18B2RXH4 712 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 YEATS4O95619 227 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 TOP1P11387 765 aaKnown RBP13.36□□□□□ -0.27
SCAF11-201ENST00000266589 LIG1P18858 919 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 NOVP48745 357 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 MRE11P49959 708 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 GNAQP50148 359 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 STK38Q15208 465 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 LRSAM1Q6UWE0 723 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 NOSTRINQ8IVI9 506 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 OGFOD1Q8N543 542 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 LINC00301Q8NCQ3 95 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 SHISA4Q96DD7 197 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 BCS1LQ9Y276 419 aa13.36□□□□□ -0.27
SCAF11-201ENST00000266589 IGKV6D-41A0A0C4DH26 115 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 SPDYE2BA6NHP3 402 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 NFKBIEO00221 500 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 SPDYE6P0CI01 402 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 SLURP2P0DP57 97 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 ME1P48163 572 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 NASPP49321 788 aaPredicted RBP13.35□□□□□ -0.27
SCAF11-201ENST00000266589 ANO1Q5XXA6 986 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 SH3BP5LQ7L8J4 393 aa13.35□□□□□ -0.27
SCAF11-201ENST00000266589 PIBF1Q8WXW3 757 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms