RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 PALLDQ8WX93 1383 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 MAST3O60307 1309 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 ITIH6Q6UXX5 1313 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 HOXC9P31274 260 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 SMTNP53814 917 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 CEP57Q86XR8 500 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 RRP36Q96EU6 259 aaKnown RBP8.13□□□□□ -1.11
CSDE1-201ENST00000261443 HAUS4Q9H6D7 363 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 SLC24A3Q9HC58 644 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 COPRSQ9NQ92 184 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 TBX22Q9Y458 520 aa8.13□□□□□ -1.11
CSDE1-201ENST00000261443 EPN1Q9Y6I3 576 aaPredicted RBP8.13□□□□□ -1.11
CSDE1-201ENST00000261443 ECM2O94769 699 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 NDUFA10O95299 355 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 KCNA6P17658 529 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CDC25AP30304 524 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 KRT9P35527 623 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 ATP1A2P50993 1020 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 NAP1L1P55209 391 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 C2orf54Q08AI8 447 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 IMMTQ16891 758 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CCDC122Q5T0U0 273 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 WLSQ5T9L3 541 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 PAPD7Q5XG87 772 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 IQCEQ6IPM2 695 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 KANK3Q6NY19 840 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 RIC3Q7Z5B4 369 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 YTHDF3Q7Z739 585 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 RALYLQ86SE5 291 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 FMNL3Q8IVF7 1028 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 ARL8AQ96BM9 186 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 VCPKMTQ9H867 229 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 N4BP3O15049 544 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 HSF2BPO75031 334 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 ERCC3P19447 782 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 PTPN12Q05209 780 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 GRIN1Q05586 938 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 SF3B2Q13435 895 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CRYMQ14894 314 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 TTMPQ5BVD1 217 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CDKAL1Q5VV42 579 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CCDC13Q8IYE1 715 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 STK11IPQ8N1F8 1099 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 NEUROD6Q96NK8 337 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CHP1Q99653 195 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 SEC31BQ9NQW1 1179 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 LMO7Q8WWI1 1683 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 SIPA1L3O60292 1781 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 RNF225M0QZC1 329 aaPredicted RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 ZNF185O15231 689 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 CDKL5O76039 1030 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 IGKV5-2P06315 115 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 EPB41P11171 864 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 NEXNQ0ZGT2 675 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 NAA35Q5VZE5 725 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 PHKBQ93100 1093 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 SLC40A1Q9NP59 571 aa8.12□□□□□ -1.11
CSDE1-201ENST00000261443 REXO2Q9Y3B8 237 aaKnown RBP8.12□□□□□ -1.11
CSDE1-201ENST00000261443 MAP3K15Q6ZN16 1313 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 ZNF142P52746 1687 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 CAMTA1Q9Y6Y1 1673 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 A0A1B0GUA9 196 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 M0R2C6 588 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 KIF3CO14782 793 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 SEMA3EO15041 775 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 RNF113AO15541 343 aaKnown RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 RASSF9O75901 435 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 A1BGP04217 495 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 CD44P16070 742 aaKnown RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 MRPL12P52815 198 aaKnown RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 TRIM14Q14142 442 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 PLCB4Q15147 1175 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 SNCBQ16143 134 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 MB21D2Q8IYB1 491 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 NCOA7Q8NI08 942 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 ZNF473Q8WTR7 871 aaKnown RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 TRIM6Q9C030 488 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 EPN3Q9H201 632 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 VPS16Q9H269 839 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 JADE2Q9NQC1 790 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 TFR2Q9UP52 801 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 PRAMEF22A3QJZ6 481 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 EZRP15311 586 aaKnown RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 RXRAP19793 462 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 LSP1P33241 339 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 METAP2P50579 478 aaKnown RBP eCLIP8.11□□□□□ -1.111e-12■□□□□ 10.3
CSDE1-201ENST00000261443 CLNS1AP54105 237 aaKnown RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 ANTXR2P58335 489 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 NLRP6P59044 892 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 IFT88Q13099 833 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 CUL4BQ13620 913 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 ALS2CLQ60I27 953 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 KCTD16Q68DU8 428 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 NAIF1Q69YI7 327 aaPredicted RBP8.11□□□□□ -1.11
CSDE1-201ENST00000261443 UBE3BQ7Z3V4 1068 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 KIAA1328Q86T90 577 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 SH2D3CQ8N5H7 860 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 AIDAQ96BJ3 306 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 SGSM3Q96HU1 749 aa8.11□□□□□ -1.11
CSDE1-201ENST00000261443 FRMD3A2A2Y4 597 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 381.3 ms