RNA–Protein interactions for RNA: ENST00000254630.11

PTCD3-201, Transcript of pentatricopeptide repeat domain 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTCD3, Length 6,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-201ENST00000254630 V9GYY5 206 aaPredicted RBP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 SORBS3O60504 671 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 CDC37L1Q7L3B6 337 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 BLZF1Q9H2G9 400 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 VPS54Q9P1Q0 977 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 MAGI3Q5TCQ9 1506 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 ATP10DQ9P241 1426 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 KRT40Q6A162 431 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 NSMFQ6X4W1 530 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 ZNF496Q96IT1 587 aaPredicted RBP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 PPANQ9NQ55 473 aaKnown RBP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 SMCO2A6NFE2 343 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 XRCC6P12956 609 aaKnown RBP eCLIP9.69□□□□□ -0.861e-7■□□□□ 10
PTCD3-201ENST00000254630 FANCCQ00597 558 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 DOK7Q18PE1 504 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 MFSD14BQ5SR56 506 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 TPH2Q8IWU9 490 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 FNBP4Q8N3X1 1017 aaPredicted RBP9.69□□□□□ -0.86
PTCD3-201ENST00000254630 BEGAINQ9BUH8 593 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 WDR70Q9NW82 654 aa9.69□□□□□ -0.86
PTCD3-201ENST00000254630 P4HA1P13674 534 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 BTDP43251 543 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 TNFAIP1Q13829 316 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 OTUD7BQ6GQQ9 843 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 NELFCDQ8IXH7 590 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 PKNOX2Q96KN3 472 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 CARD10Q9BWT7 1032 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 RSPH14Q9UHP6 348 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 BCS1LQ9Y276 419 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 BCRP11274 1271 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 HDXQ7Z353 690 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 SECISBP2LQ93073 1101 aaKnown RBP9.68□□□□□ -0.86
PTCD3-201ENST00000254630 PAGR1Q9BTK6 254 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 MED10Q9BTT4 135 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 USTQ9Y2C2 406 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 ZNF202O95125 648 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 YWHAEP62258 255 aaKnown RBP9.68□□□□□ -0.86
PTCD3-201ENST00000254630 ITIH3Q06033 890 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 INF2Q27J81 1249 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 HAUS2Q9NVX0 235 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 KIF22Q14807 665 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 MLKLQ8NB16 471 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 SMCR8Q8TEV9 937 aaPredicted RBP9.68□□□□□ -0.86
PTCD3-201ENST00000254630 CHURC1Q8WUH1 139 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 DCPSQ96C86 337 aaKnown RBP9.68□□□□□ -0.86
PTCD3-201ENST00000254630 NACA2Q9H009 215 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 GINS2Q9Y248 185 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 YEATS2Q9ULM3 1422 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 hCG_1642624A0A1W2PR95 340 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 PLEKHG3A1L390 1219 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 GAS7O60861 476 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 GNA14O95837 355 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 HACE1Q8IYU2 909 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 TAB2Q9NYJ8 693 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 SAMD15Q9P1V8 674 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 MAP3K15Q6ZN16 1313 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 SSH2Q76I76 1423 aa9.68□□□□□ -0.86
PTCD3-201ENST00000254630 PER1O15534 1290 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 RAD51AP2Q09MP3 1159 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 SFMBT2Q5VUG0 894 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 REXO1Q8N1G1 1221 aaKnown RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 LSM14BQ9BX40 385 aaKnown RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 PODXL2Q9NZ53 605 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 EXOC3O60645 756 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 POLR2MP0CAP2 368 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 SCNN1DP51172 638 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 CHRNDQ07001 517 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 SLFN12Q8IYM2 578 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 HAUS7Q99871 368 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 NT5C3AQ9H0P0 336 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 GYG1P46976 350 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 RPS8P62241 208 aaKnown RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 PNOCQ13519 176 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 HERC4Q5GLZ8 1057 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 ARHGAP27Q6ZUM4 889 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 ATP8A2Q9NTI2 1148 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 ABCC4O15439 1325 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 KCNQ3O43525 872 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 ADCY9O60503 1353 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 TUBB2AQ13885 445 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 CLUL1Q15846 466 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 SYCE1Q8N0S2 351 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 FAM76AQ8TAV0 307 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 DEPTORQ8TB45 409 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 NSMCE1Q8WV22 266 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 TUBB2BQ9BVA1 445 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 TRPC6Q9Y210 931 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 TESPA1A2RU30 521 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 DDAH1O94760 285 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 BCAMP50895 628 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 TPD52P55327 224 aaPredicted RBP9.67□□□□□ -0.86
PTCD3-201ENST00000254630 GNPTABQ3T906 1256 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 SLC9C1Q4G0N8 1177 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 MCTP2Q6DN12 878 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 ZNF654Q8IZM8 581 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 METTL13Q8N6R0 699 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 MLXIPQ9HAP2 919 aa9.67□□□□□ -0.86
PTCD3-201ENST00000254630 CBX8Q9HC52 389 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms