RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 KCTD19Q17RG1 926 aaPredicted RBP13.56□□□□□ -0.24
USHBP1-201ENST00000252597 AKNAD1Q5T1N1 836 aa13.56□□□□□ -0.24
USHBP1-201ENST00000252597 ZNF654Q8IZM8 581 aa13.56□□□□□ -0.24
USHBP1-201ENST00000252597 NOA1Q8NC60 698 aaKnown RBP13.56□□□□□ -0.24
USHBP1-201ENST00000252597 IPO7O95373 1038 aaKnown RBP13.55□□□□□ -0.24
USHBP1-201ENST00000252597 MMP1P03956 469 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 RILPL1Q5EBL4 403 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 EARS2Q5JPH6 523 aaKnown RBP13.55□□□□□ -0.24
USHBP1-201ENST00000252597 FAM47AQ5JRC9 791 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 SRGAP1Q7Z6B7 1085 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 TTLL11Q8NHH1 800 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 IGDCC4Q8TDY8 1250 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 RABGGTAQ92696 567 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 HPSEQ9Y251 543 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 KCNQ4P56696 695 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 SMIM5Q71RC9 77 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 SPATA5Q8NB90 893 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 TMEM87BQ96K49 555 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 STRBPQ96SI9 672 aaKnown RBP13.55□□□□□ -0.24
USHBP1-201ENST00000252597 CHP1Q99653 195 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 FUT8Q9BYC5 575 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 ADGRG1Q9Y653 693 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 NCAPD2Q15021 1401 aa13.55□□□□□ -0.24
USHBP1-201ENST00000252597 TRIM49BA6NDI0 452 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 PLEKHA8P1O95397 391 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 FANCBQ8NB91 859 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 EPB41L4AQ9HCS5 686 aaPredicted RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 GDAQ9Y2T3 454 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 FBXO2Q9UK22 296 aaPredicted RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 CEP131Q9UPN4 1083 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 XIRP1Q702N8 1843 aaKnown RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 LMO7Q8WWI1 1683 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 A0A087X0B3 334 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 WTIPA6NIX2 430 aaPredicted RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 NMT2O60551 498 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 PLCD1P51178 756 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 PTGDRQ13258 359 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 RASGRF1Q13972 1273 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 TTF1Q15361 905 aaPredicted RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 IFIT1BQ5T764 474 aaKnown RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 HDXQ7Z353 690 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 KLHL34Q8N239 644 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 RASSF4Q9H2L5 321 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 BRMS1Q9HCU9 246 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 FAM217BQ9NTX9 383 aaPredicted RBP13.54□□□□□ -0.24
USHBP1-201ENST00000252597 CDC23Q9UJX2 597 aa13.54□□□□□ -0.24
USHBP1-201ENST00000252597 SOS2Q07890 1332 aaPredicted RBP13.53□□□□□ -0.24
USHBP1-201ENST00000252597 HEG1Q9ULI3 1381 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 MYO1CO00159 1063 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 WNT7AO00755 349 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 STARD3NLO95772 234 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 PTPREP23469 700 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 RNASE9P60153 205 aaKnown RBP13.53□□□□□ -0.24
USHBP1-201ENST00000252597 CCDC122Q5T0U0 273 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 TMEM139Q8IV31 216 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 ENOX1Q8TC92 643 aaKnown RBP13.53□□□□□ -0.24
USHBP1-201ENST00000252597 NAPGQ99747 312 aaPredicted RBP13.53□□□□□ -0.24
USHBP1-201ENST00000252597 GPR108Q9NPR9 543 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 TNKSO95271 1327 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 JCADQ9P266 1359 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 CYP27A1Q02318 531 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 ANKRD13CQ8N6S4 541 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 MED15Q96RN5 788 aa13.53□□□□□ -0.24
USHBP1-201ENST00000252597 GNL3LQ9NVN8 582 aaKnown RBP13.53□□□□□ -0.24
USHBP1-201ENST00000252597 PDE8BO95263 885 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 DEXIO95424 95 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 CEP112Q8N8E3 955 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 TRIM47Q96LD4 638 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 CENPHQ9H3R5 247 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 PATL2C9JE40 543 aaKnown RBP13.52□□□□□ -0.24
USHBP1-201ENST00000252597 SLC5A1P13866 664 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 TRIM21P19474 475 aaKnown RBP13.52□□□□□ -0.24
USHBP1-201ENST00000252597 NTRK3Q16288 839 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 PAGE5Q96GU1 130 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 CRACR2AQ9BSW2 395 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 FAM204AQ9H8W3 233 aa13.52□□□□□ -0.24
USHBP1-201ENST00000252597 FEZ2Q9UHY8 353 aaPredicted RBP13.52□□□□□ -0.24
USHBP1-201ENST00000252597 CCDC196A0A1B0GTZ2 297 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 PP2D1A8MPX8 630 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 TOM1O60784 492 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 FMNL1O95466 1100 aaPredicted RBP13.52□□□□□ -0.25
USHBP1-201ENST00000252597 GYG1P46976 350 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 DYNLL1P63167 89 aaKnown RBP13.52□□□□□ -0.25
USHBP1-201ENST00000252597 CUL4BQ13620 913 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 CASP8Q14790 479 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 PTPROQ16827 1216 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 SPATA1Q5VX52 437 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 CTR9Q6PD62 1173 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 SMARCC1Q92922 1105 aaPredicted RBP13.52□□□□□ -0.25
USHBP1-201ENST00000252597 ACSBG1Q96GR2 724 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 KRT23Q9C075 422 aa13.52□□□□□ -0.25
USHBP1-201ENST00000252597 RNF225M0QZC1 329 aaPredicted RBP13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CIAO1O76071 339 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 TUBB4AP04350 444 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 KRT2P35908 639 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CATIPQ7Z7H3 387 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CRACR2BQ8N4Y2 399 aaPredicted RBP13.51□□□□□ -0.25
USHBP1-201ENST00000252597 CCDC148Q8NFR7 591 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 NELFBQ8WX92 580 aa13.51□□□□□ -0.25
USHBP1-201ENST00000252597 GPKOWQ92917 476 aaPredicted RBP eCLIP13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms