RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 NR1I3Q14994 352 aa21.33■■□□□ 1
CPSF3-201ENST00000238112 FERMT2Q96AC1 680 aa21.33■■□□□ 1
CPSF3-201ENST00000238112 SHISA4Q96DD7 197 aa21.33■■□□□ 1
CPSF3-201ENST00000238112 EPSTI1Q96J88 318 aa21.33■■□□□ 1
CPSF3-201ENST00000238112 ZNF804BA4D1E1 1349 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 A0A1B0GTH6 734 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 hCG_1642624A0A1W2PR95 340 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 TADA3O75528 432 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 PRDM1O75626 825 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 TPM1P09493 284 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 GYG1P46976 350 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 V9GY48 417 aaPredicted RBP21.32■■□□□ 1
CPSF3-201ENST00000238112 CALM1P0DP23 149 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 CALM2P0DP24 149 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 CALM3P0DP25 149 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 KLHL10Q6JEL2 608 aa21.32■■□□□ 1
CPSF3-201ENST00000238112 SYMPKQ92797 1274 aaKnown RBP21.32■■□□□ 1
CPSF3-201ENST00000238112 RIOK1Q9BRS2 568 aaKnown RBP21.32■■□□□ 1
CPSF3-201ENST00000238112 SYNRGQ9UMZ2 1314 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 COL14A1Q05707 1796 aaKnown RBP21.31■■□□□ 1
CPSF3-201ENST00000238112 A0A087X0B3 334 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 AKR1B15C9JRZ8 316 aaPredicted RBP21.31■■□□□ 1
CPSF3-201ENST00000238112 SMIM22K7EJ46 135 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 PLEKHA8P1O95397 391 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 FUT2Q10981 343 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 EARS2Q5JPH6 523 aaKnown RBP21.31■■□□□ 1
CPSF3-201ENST00000238112 SPATA1Q5VX52 437 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 PAGE5Q96GU1 130 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 BCL9LQ86UU0 1499 aa21.31■■□□□ 1
CPSF3-201ENST00000238112 BRIP1Q9BX63 1249 aa21.3■■□□□ 1
CPSF3-201ENST00000238112 CAVIN4Q5BKX8 364 aa21.3■■□□□ 1
CPSF3-201ENST00000238112 TMCO3Q6UWJ1 677 aa21.3■■□□□ 1
CPSF3-201ENST00000238112 ANKRD18AQ8IVF6 992 aa21.3■■□□□ 1
CPSF3-201ENST00000238112 WDR24Q96S15 920 aa21.3■■□□□ 1
CPSF3-201ENST00000238112 DOT1LQ8TEK3 1739 aa21.3■■□□□ 1
CPSF3-201ENST00000238112 CYP2D7A0A087X1C5 515 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 LOC102724428A0A0B4J2F2 783 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 PCP11498 1178 aaKnown RBP21.29■■□□□ 1
CPSF3-201ENST00000238112 SIK1P57059 783 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 DYNLL1P63167 89 aaKnown RBP21.29■■□□□ 1
CPSF3-201ENST00000238112 TERF2Q15554 542 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 PPFIBP1Q86W92 1011 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 GSDMAQ96QA5 445 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 PANX2Q96RD6 677 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 STX17P56962 302 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 SH3RF1Q7Z6J0 888 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 ZNF652Q9Y2D9 606 aa21.29■■□□□ 1
CPSF3-201ENST00000238112 PHLPP1O60346 1717 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 DDAH1O94760 285 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 UBE4AQ14139 1066 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 ZNF174Q15697 407 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 TTC38Q5R3I4 469 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 ACSBG1Q96GR2 724 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 CTAGE1Q96RT6 745 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 DESI2Q9BSY9 194 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 FHOD1Q9Y613 1164 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 DUOX1Q9NRD9 1551 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 MYH6P13533 1939 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 CCDC175P0C221 793 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 CD44P16070 742 aaKnown RBP21.28■■□□□ 1
CPSF3-201ENST00000238112 MAP3K9P80192 1104 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 TROAPQ12815 778 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 DPYDQ12882 1025 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 CUL4BQ13620 913 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 IGSF22Q8N9C0 903 aa21.28■■□□□ 1
CPSF3-201ENST00000238112 CICQ96RK0 1608 aaPredicted RBP21.27■■□□□ 1
CPSF3-201ENST00000238112 TEX33O43247 280 aa21.27■■□□□ 1
CPSF3-201ENST00000238112 CASP1P29466 404 aa21.27■■□□□ 1
CPSF3-201ENST00000238112 FILIP1LQ4L180 1135 aa21.27■■□□□ 1
CPSF3-201ENST00000238112 TMTC3Q6ZXV5 915 aa21.27■■□□□ 1
CPSF3-201ENST00000238112 PNMA6AP0CW24 399 aaPredicted RBP21.27■□□□□ 0.99
CPSF3-201ENST00000238112 PPP2R3AQ06190 1150 aa21.27■□□□□ 0.99
CPSF3-201ENST00000238112 ITPK1Q13572 414 aa21.27■□□□□ 0.99
CPSF3-201ENST00000238112 NAA15Q9BXJ9 866 aaKnown RBP21.27■□□□□ 0.99
CPSF3-201ENST00000238112 MRFAP1Q9Y605 127 aa21.27■□□□□ 0.99
CPSF3-201ENST00000238112 COL1A1P02452 1464 aaPredicted RBP21.27■□□□□ 0.99
CPSF3-201ENST00000238112 KARSQ15046 597 aaKnown RBP21.26■□□□□ 0.99
CPSF3-201ENST00000238112 APTXQ7Z2E3 356 aaKnown RBP21.26■□□□□ 0.99
CPSF3-201ENST00000238112 CTCFLQ8NI51 663 aaPredicted RBP21.26■□□□□ 0.99
CPSF3-201ENST00000238112 WNT7AO00755 349 aa21.26■□□□□ 0.99
CPSF3-201ENST00000238112 SEMA3EO15041 775 aa21.26■□□□□ 0.99
CPSF3-201ENST00000238112 CDKAL1Q5VV42 579 aa21.26■□□□□ 0.99
CPSF3-201ENST00000238112 CTR9Q6PD62 1173 aa21.26■□□□□ 0.99
CPSF3-201ENST00000238112 SMYD4Q8IYR2 804 aaPredicted RBP21.26■□□□□ 0.99
CPSF3-201ENST00000238112 TNFRSF25Q93038 417 aa21.26■□□□□ 0.99
CPSF3-201ENST00000238112 KIFC2Q96AC6 838 aa21.26■□□□□ 0.99
CPSF3-201ENST00000238112 CDCA7Q9BWT1 371 aaPredicted RBP21.26■□□□□ 0.99
CPSF3-201ENST00000238112 ADD3Q9UEY8 706 aaKnown RBP21.26■□□□□ 0.99
CPSF3-201ENST00000238112 SOWAHDA6NJG2 315 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 FGRP09769 529 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 ATP2C1P98194 919 aaPredicted RBP21.25■□□□□ 0.99
CPSF3-201ENST00000238112 RBL2Q08999 1139 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 PTGDRQ13258 359 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 MTF1Q14872 753 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 DDB1Q16531 1140 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 BSDC1Q9NW68 430 aaPredicted RBP21.25■□□□□ 0.99
CPSF3-201ENST00000238112 LAMB2P55268 1798 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 STRCQ7RTU9 1775 aa21.25■□□□□ 0.99
CPSF3-201ENST00000238112 CNTNAP5Q8WYK1 1306 aa21.24■□□□□ 0.99
CPSF3-201ENST00000238112 USP17L12C9JPN9 530 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms