RNA–Protein interactions for RNA: ENST00000641939.1

PHGDH-231, Transcript of phosphoglycerate dehydrogenase, human

Gene PHGDH, Length 540 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-231	ENST00000641939	TRIM17	Q9Y577	477 aa		18.11	■□□□□ 0.49
PHGDH-231	ENST00000641939	RNF113A	O15541	343 aa	Known RBP	18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	PRKAB2	O43741	272 aa		18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	ZFY	P08048	801 aa	Predicted RBP	18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	LRRFIP1	Q32MZ4	808 aa	Known RBP	18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	FBXO46	Q6PJ61	603 aa	Predicted RBP	18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	OTOP1	Q7RTM1	612 aa		18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	PROCA1	Q8NCQ7	364 aa	Predicted RBP	18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	PARK7	Q99497	189 aa	Known RBP	18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	WDR18	Q9BV38	432 aa		18.1	■□□□□ 0.49
PHGDH-231	ENST00000641939	GABPA	Q06546	454 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	SHROOM1	Q2M3G4	852 aa	Predicted RBP	18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	C17orf99	Q6UX52	265 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	SMC5	Q8IY18	1101 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	APPBP2	Q92624	585 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	DDRGK1	Q96HY6	314 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	EFCC1	Q9HA90	598 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	STAP2	Q9UGK3	403 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	CPA4	Q9UI42	421 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	AGTPBP1	Q9UPW5	1226 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	SLC4A4	Q9Y6R1	1079 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	ZSWIM8	A7E2V4	1837 aa		18.09	■□□□□ 0.49
PHGDH-231	ENST00000641939	MGAM	O43451	1857 aa		18.08	■□□□□ 0.49
PHGDH-231	ENST00000641939	ADGRA2	Q96PE1	1338 aa		18.08	■□□□□ 0.49
PHGDH-231	ENST00000641939	GH2	P01242	217 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	IGHD	P01880	384 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	CYP2C8	P10632	490 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	SHMT1	P34896	483 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	HMGCS2	P54868	508 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	ARHGEF6	Q15052	776 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	CERKL	Q49MI3	558 aa	Predicted RBP	18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	SH3D19	Q5HYK7	790 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	HPS5	Q9UPZ3	1129 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	HTT	P42858	3142 aa		18.08	■□□□□ 0.48
PHGDH-231	ENST00000641939	CYP2D6	P10635	497 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	PDE1A	P54750	535 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	BACE1	P56817	501 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	LACTB	P83111	547 aa	Predicted RBP	18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	CAP1	Q01518	475 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	EVX2	Q03828	476 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	KIF22	Q14807	665 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	ABCB5	Q2M3G0	1257 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	TREML2	Q5T2D2	321 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	AMOTL1	Q8IY63	956 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	OSBP2	Q969R2	916 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	STRBP	Q96SI9	672 aa	Known RBP	18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	FSD1	Q9BTV5	496 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	LNPK	Q9C0E8	428 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	TAOK2	Q9UL54	1235 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	CENPF	P49454	3210 aa		18.07	■□□□□ 0.48
PHGDH-231	ENST00000641939	C19orf81	C9J6K1	198 aa		18.06	■□□□□ 0.48
PHGDH-231	ENST00000641939	MTMR2	Q13614	643 aa		18.06	■□□□□ 0.48
PHGDH-231	ENST00000641939	B4GALNT3	Q6L9W6	998 aa		18.06	■□□□□ 0.48
PHGDH-231	ENST00000641939	CABP5	Q9NP86	173 aa		18.06	■□□□□ 0.48
PHGDH-231	ENST00000641939	SWAP70	Q9UH65	585 aa		18.06	■□□□□ 0.48
PHGDH-231	ENST00000641939	PNMA3	Q9UL41	463 aa		18.06	■□□□□ 0.48
PHGDH-231	ENST00000641939	USP17L10	C9JJH3	530 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	USP17L12	C9JPN9	530 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	USP17L21	D6R901	530 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	BCR	P11274	1271 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	IRX6	P78412	446 aa	Predicted RBP	18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	PABPC4	Q13310	644 aa	Known RBP eCLIP	18.05	■□□□□ 0.48	5e-8	■■□□□ 13.9
PHGDH-231	ENST00000641939	RAB3GAP1	Q15042	981 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	C12orf60	Q5U649	245 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	CHD1L	Q86WJ1	897 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	TMOD4	Q9NZQ9	345 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	PTPN22	Q9Y2R2	807 aa		18.05	■□□□□ 0.48
PHGDH-231	ENST00000641939	CYP2D7	A0A087X1C5	515 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	GPAA1	O43292	621 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	NUCB1	Q02818	461 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	GIMAP6	Q6P9H5	292 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	SLC44A5	Q8NCS7	719 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	SMCR8	Q8TEV9	937 aa	Predicted RBP	18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	DYNLL2	Q96FJ2	89 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	ARHGAP39	Q9C0H5	1083 aa		18.04	■□□□□ 0.48
PHGDH-231	ENST00000641939	DOCK3	Q8IZD9	2030 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	GSG1L2	A8MUP6	293 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939		M0R2C6	588 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	GNRH1	P01148	92 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	GNAT2	P19087	354 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	CTR9	Q6PD62	1173 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	EVI5L	Q96CN4	794 aa		18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	ARPP21	Q9UBL0	812 aa	Predicted RBP	18.03	■□□□□ 0.48
PHGDH-231	ENST00000641939	MPHOSPH10	O00566	681 aa	Known RBP	18.02	■□□□□ 0.48
PHGDH-231	ENST00000641939	OSBP	P22059	807 aa		18.02	■□□□□ 0.48
PHGDH-231	ENST00000641939	ZMYM1	Q5SVZ6	1142 aa		18.02	■□□□□ 0.48
PHGDH-231	ENST00000641939	USP17L2	Q6R6M4	530 aa		18.02	■□□□□ 0.48
PHGDH-231	ENST00000641939	C16orf86	Q6ZW13	317 aa		18.02	■□□□□ 0.48
PHGDH-231	ENST00000641939	KIAA0100	Q14667	2235 aa	Known RBP	18.02	■□□□□ 0.47
PHGDH-231	ENST00000641939	SMIM22	K7EJ46	135 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	HOXA7	P31268	230 aa	Predicted RBP	18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	GUCY1A2	P33402	732 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	PSMC4	P43686	418 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	CDK8	P49336	464 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	SEPT2	Q15019	361 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	SBK1	Q52WX2	424 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	TRIM47	Q96LD4	638 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	SEC62	Q99442	399 aa	Known RBP	18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	FEZ1	Q99689	392 aa		18.01	■□□□□ 0.47
PHGDH-231	ENST00000641939	ASCC2	Q9H1I8	757 aa	Predicted RBP	18.01	■□□□□ 0.47

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