RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 OATP04181 439 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 TMEM57Q8N5G2 664 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 NOLC1Q14978 699 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCN1A-218ENST00000640036 WDR44Q5JSH3 913 aa5.65□□□□□ -1.5
SCN1A-218ENST00000640036 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.65□□□□□ -1.5
SCN1A-218ENST00000640036 USP17L10C9JJH3 530 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 CYP2B6P20813 491 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 KRT17Q04695 432 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 CHRNDQ07001 517 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 BIRC3Q13489 604 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 PPP2R5DQ14738 602 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 ANGEL2Q5VTE6 544 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 ARMCX5Q6P1M9 558 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 NBPF10Q6P3W6 841 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 FBXO11Q86XK2 927 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 TRMT44Q8IYL2 757 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 SPATA5Q8NB90 893 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 DDX23Q9BUQ8 820 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 KATNAL1Q9BW62 490 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 BICC1Q9H694 974 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 KANSL2Q9H9L4 492 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 SERPINB13Q9UIV8 391 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 DDX39AO00148 427 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 KIAA0754O94854 1291 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 PRPF6O94906 941 aaKnown RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 FAM160B2Q86V87 743 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 GIMAP8Q8ND71 665 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 NACC1Q96RE7 527 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 DPP7Q9UHL4 492 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 ADGBQ8N7X0 1667 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 GMPSP49915 693 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 GOLGA8FQ08AF8 430 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 GOLGA8DPQ0D2H9 430 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 CC2D1AQ6P1N0 951 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 CHD1LQ86WJ1 897 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 DDX12PQ92771 950 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 TSNARE1Q96NA8 513 aa5.65□□□□□ -1.51
SCN1A-218ENST00000640036 HMX1Q9NP08 348 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-218ENST00000640036 SASH1O94885 1247 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PSMD2Q13200 908 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 SSH1Q8WYL5 1049 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 FPGT-TNNI3KV9GXZ4 949 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 ARL1P40616 181 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 GYG1P46976 350 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 TTLL4Q14679 1199 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PPP2R5BQ15173 497 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC14Q49A88 953 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 ZNF771Q7L3S4 317 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PRPF31Q8WWY3 499 aaKnown RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 FAM107BQ9H098 131 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 IQSEC2Q5JU85 1478 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 CDC42BPGQ6DT37 1551 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 CLTCQ00610 1675 aaKnown RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PDE4DIPQ5VU43 2346 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 COL15A1P39059 1388 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 AATKQ6ZMQ8 1374 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PLEKHG2Q9H7P9 1386 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 CCDC171Q6TFL3 1326 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 H0YCG3 227 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 CHMP2AO43633 222 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 RGS2P41220 211 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 SLFN13Q68D06 897 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 USP50Q70EL3 339 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 RPUSD2Q8IZ73 545 aaKnown RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 MED10Q9BTT4 135 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 GAS7O60861 476 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 C6orf222P0C671 652 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 STAT2P52630 851 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 SPP2Q13103 211 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 LEKR1Q6ZMV7 388 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 XAGE2Q96GT9 111 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 EXOC1Q9NV70 894 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 ATP11BQ9Y2G3 1177 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 METP08581 1390 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 ASB14A6NK59 587 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 SERPINC1P01008 464 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 FDX1P10109 184 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 NFIXQ14938 502 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 RHPN1Q8TCX5 695 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PLVAPQ9BX97 442 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 TTC12Q9H892 705 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 MMRN2Q9H8L6 949 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 RNF113AO15541 343 aaKnown RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 SUPT20HL2P0C7V6 817 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 TIMM10P62072 90 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 AKNAD1Q5T1N1 836 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 MAP1SQ66K74 1059 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 ENGASEQ8NFI3 743 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 CRAMP1Q96RY5 1269 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 PTPREP23469 700 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 GCLCP48506 637 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 POLGP54098 1239 aaPredicted RBP5.64□□□□□ -1.51
SCN1A-218ENST00000640036 TSPYL1Q9H0U9 437 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 IRAK4Q9NWZ3 460 aa5.64□□□□□ -1.51
SCN1A-218ENST00000640036 FANCIQ9NVI1 1328 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 ERLIN1O75477 346 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 KRT10P13645 584 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 CCND2P30279 289 aa5.63□□□□□ -1.51
SCN1A-218ENST00000640036 GABPAQ06546 454 aa5.63□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms