RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 GZF1Q9H116 711 aaPredicted RBP7.75□□□□□ -1.17
CD44-239ENST00000639002 MIR1-1HGQ9H1L0 117 aa7.75□□□□□ -1.17
CD44-239ENST00000639002 RC3H2Q9HBD1 1191 aaKnown RBP7.75□□□□□ -1.17
CD44-239ENST00000639002 SEMA3GQ9NS98 782 aa7.75□□□□□ -1.17
CD44-239ENST00000639002 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.75□□□□□ -1.17
CD44-239ENST00000639002 ZNF865P0CJ78 1059 aaPredicted RBP7.74□□□□□ -1.17
CD44-239ENST00000639002 XPCQ01831 940 aaPredicted RBP7.74□□□□□ -1.17
CD44-239ENST00000639002 TSNAXIP1Q2TAA8 658 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 ANGEL2Q5VTE6 544 aaKnown RBP7.74□□□□□ -1.17
CD44-239ENST00000639002 OGFOD2Q6N063 350 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 LETMD1Q6P1Q0 360 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 C22orf34Q6ZV56 151 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 XAGE3Q8WTP9 111 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 ASB11Q8WXH4 323 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 HSPA12BQ96MM6 686 aa7.74□□□□□ -1.17
CD44-239ENST00000639002 GNAT3A8MTJ3 354 aa7.73□□□□□ -1.17
CD44-239ENST00000639002 CLCN7P51798 805 aa7.73□□□□□ -1.17
CD44-239ENST00000639002 RPL6Q02878 288 aaKnown RBP7.73□□□□□ -1.17
CD44-239ENST00000639002 SLC23A3Q6PIS1 610 aa7.73□□□□□ -1.17
CD44-239ENST00000639002 BNC2Q6ZN30 1099 aaPredicted RBP7.73□□□□□ -1.17
CD44-239ENST00000639002 ATG4DQ86TL0 474 aaPredicted RBP7.73□□□□□ -1.17
CD44-239ENST00000639002 MRPL41Q8IXM3 137 aaKnown RBP7.73□□□□□ -1.17
CD44-239ENST00000639002 DPH2Q9BQC3 489 aaPredicted RBP7.73□□□□□ -1.17
CD44-239ENST00000639002 TPX2Q9ULW0 747 aaKnown RBP7.73□□□□□ -1.17
CD44-239ENST00000639002 ST14Q9Y5Y6 855 aa7.73□□□□□ -1.17
CD44-239ENST00000639002 CAPN6Q9Y6Q1 641 aa7.73□□□□□ -1.17
CD44-239ENST00000639002 FAM221AA4D161 298 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 PGRP06401 933 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 RLBP1P12271 317 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 LMNB1P20700 586 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 SFRP5Q5T4F7 317 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 CDH24Q86UP0 819 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 ACSF2Q96CM8 615 aaPredicted RBP7.72□□□□□ -1.17
CD44-239ENST00000639002 KRTAP9-9Q9BYP9 154 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 KRTAP9-4Q9BYQ2 154 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 CORINQ9Y5Q5 1042 aa7.72□□□□□ -1.17
CD44-239ENST00000639002 SORBS3O60504 671 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 CILPO75339 1184 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 PF4P02776 101 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 ZP2Q05996 745 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 IKZF1Q13422 519 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 CAMK2GQ13555 558 aaPredicted RBP7.71□□□□□ -1.18
CD44-239ENST00000639002 CDKAL1Q5VV42 579 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 MCATQ8IVS2 390 aaKnown RBP7.71□□□□□ -1.18
CD44-239ENST00000639002 CRELD1Q96HD1 420 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 TMEM87BQ96K49 555 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 ATP13A1Q9HD20 1204 aa7.71□□□□□ -1.18
CD44-239ENST00000639002 LMNB2Q03252 620 aa7.7□□□□□ -1.18
CD44-239ENST00000639002 CCDC27Q2M243 656 aa7.7□□□□□ -1.18
CD44-239ENST00000639002 SLC6A19Q695T7 634 aa7.7□□□□□ -1.18
CD44-239ENST00000639002 CCDC84Q86UT8 332 aaPredicted RBP7.7□□□□□ -1.18
CD44-239ENST00000639002 MFSD4AQ8N468 514 aa7.7□□□□□ -1.18
CD44-239ENST00000639002 RHOVQ96L33 236 aa7.7□□□□□ -1.18
CD44-239ENST00000639002 UPK3BL1B0FP48 263 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 UPK3BL2E5RIL1 263 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 CBX7O95931 251 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 F13A1P00488 732 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 POU5F2Q8N7G0 328 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 DNAJB8Q8NHS0 232 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 PPP1R13LQ8WUF5 828 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 RSRP1Q9BUV0 290 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 ADAM30Q9UKF2 790 aa7.69□□□□□ -1.18
CD44-239ENST00000639002 FAM155AB1AL88 458 aaPredicted RBP7.68□□□□□ -1.18
CD44-239ENST00000639002 H3BS24 57 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 BIN1O00499 593 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 ERCC3P19447 782 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 GARTP22102 1010 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 TNK2Q07912 1038 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 FLAD1Q8NFF5 587 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 GATAD2BQ8WXI9 593 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 Q96M66 194 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 TMEM74Q96NL1 305 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 LMCD1Q9NZU5 365 aa7.68□□□□□ -1.18
CD44-239ENST00000639002 FAM168AQ92567 244 aa7.67□□□□□ -1.18
CD44-239ENST00000639002 CARS2Q9HA77 564 aaKnown RBP7.67□□□□□ -1.18
CD44-239ENST00000639002 C19orf73Q9NVV2 129 aa7.67□□□□□ -1.18
CD44-239ENST00000639002 VTI1BQ9UEU0 232 aa7.67□□□□□ -1.18
CD44-239ENST00000639002 CTNND2Q9UQB3 1225 aa7.67□□□□□ -1.18
CD44-239ENST00000639002 POLR3KQ9Y2Y1 108 aaPredicted RBP7.67□□□□□ -1.18
CD44-239ENST00000639002 WASH4PA8MWX3 477 aa7.66□□□□□ -1.18
CD44-239ENST00000639002 YBX3P16989 372 aaKnown RBP eCLIP7.66□□□□□ -1.18
CD44-239ENST00000639002 PDE4BQ07343 736 aa7.66□□□□□ -1.18
CD44-239ENST00000639002 TMEM201Q5SNT2 666 aa7.66□□□□□ -1.18
CD44-239ENST00000639002 UBE2FQ969M7 185 aa7.66□□□□□ -1.18
CD44-239ENST00000639002 CEP131Q9UPN4 1083 aa7.66□□□□□ -1.18
CD44-239ENST00000639002 PRR36Q9H6K5 1346 aa7.66□□□□□ -1.18
CD44-239ENST00000639002 PLCG1P19174 1290 aa7.65□□□□□ -1.18
CD44-239ENST00000639002 GBP2P32456 591 aaPredicted RBP7.65□□□□□ -1.18
CD44-239ENST00000639002 KIR3DL1P43629 444 aa7.65□□□□□ -1.18
CD44-239ENST00000639002 FAM160A1Q05DH4 1040 aa7.65□□□□□ -1.18
CD44-239ENST00000639002 FYB2Q5VWT5 728 aa7.65□□□□□ -1.18
CD44-239ENST00000639002 ZNF746Q6NUN9 644 aaPredicted RBP7.65□□□□□ -1.18
CD44-239ENST00000639002 RELL1Q8IUW5 271 aa7.65□□□□□ -1.18
CD44-239ENST00000639002 COPRSQ9NQ92 184 aa7.65□□□□□ -1.18
CD44-239ENST00000639002 MINDY4BA8MYZ0 360 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 DNAJA2O60884 412 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 C8AP07357 584 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 ERMP1Q7Z2K6 904 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 THAP5Q7Z6K1 395 aa7.64□□□□□ -1.19
CD44-239ENST00000639002 FBXO27Q8NI29 283 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms