RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MRPL44Q9H9J2 332 aaKnown RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 CIITAP33076 1130 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 UBXN1Q04323 297 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 MYCT1Q8N699 235 aa6.81□□□□□ -1.32
SCN1A-217ENST00000637988 SPDYE1Q8NFV5 336 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.81□□□□□ -1.32
SCN1A-217ENST00000637988 ABCA10Q8WWZ4 1543 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CALCRLQ16602 461 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 NRBP2Q9NSY0 501 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 USP40Q9NVE5 1235 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 FANCIQ9NVI1 1328 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CTAGE9A4FU28 777 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 HSPA1LP34931 641 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 POLGP54098 1239 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-217ENST00000637988 TUBB4BP68371 445 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 MFSD14BQ5SR56 506 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 NCAPH2Q6IBW4 605 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 ZMYM3Q14202 1370 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 PRIM1P49642 420 aaKnown RBP6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CCDC26Q8TAB7 109 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CHMP6Q96FZ7 201 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 KDM3AQ9Y4C1 1321 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 GCNT3O95395 438 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 LMNB1P20700 586 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 TNFAIP3P21580 790 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 TSTA3Q13630 321 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-217ENST00000637988 NBPF11Q86T75 865 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 EFCAB13Q8IY85 973 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 IQUBQ8NA54 791 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CCDC42Q96M95 316 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 HAUS8Q9BT25 410 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CLSTN2Q9H4D0 955 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 WDR64B1ANS9 1081 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 TRIM37O94972 964 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 RPS6KA2Q15349 733 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 SESTD1Q86VW0 696 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 ABCC10Q5T3U5 1492 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 ATP2C2O75185 946 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 HELBQ8NG08 1087 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-217ENST00000637988 URGCPQ8TCY9 931 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CDCA7LQ96GN5 454 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 HESX1Q9UBX0 185 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 SYCP2Q9BX26 1530 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 MAEAQ7L5Y9 396 aa6.8□□□□□ -1.32
SCN1A-217ENST00000637988 CCDC160A6NGH7 325 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 PPEF1O14829 653 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-217ENST00000637988 CD19P15391 556 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 LIG4P49917 911 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 CDR2Q01850 454 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 RTKN2Q8IZC4 609 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 FNBP4Q8N3X1 1017 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-217ENST00000637988 IL16Q14005 1332 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 IQCA1LA6NCM1 817 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 TCP10L2B9ZVM9 353 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 TRAF5O00463 557 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 IVLP07476 585 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 SH2D4BQ5SQS7 431 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 Q6ZUG5 572 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 RSRC2Q7L4I2 434 aaKnown RBP6.79□□□□□ -1.32
SCN1A-217ENST00000637988 CCDC25Q86WR0 208 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 IFT81Q8WYA0 676 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 CIB2O75838 187 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 CERKLQ49MI3 558 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-217ENST00000637988 ERFEQ4G0M1 354 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 MFSD14CQ5VZR4 134 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 ADALQ6DHV7 355 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 MIER3Q7Z3K6 550 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 PLBD2Q8NHP8 589 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 SSH1Q8WYL5 1049 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 UBN1Q9NPG3 1134 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 PAXBP1Q9Y5B6 917 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 POLR2MP0CAP2 368 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 ZNF18P17022 549 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 FAM102BQ5T8I3 360 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 ISM2Q6H9L7 571 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 DHX58Q96C10 678 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 CETN3O15182 167 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 KCNA6P17658 529 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 HSPA4P34932 840 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 FYB2Q5VWT5 728 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 RAET1EQ8TD07 263 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 IP6K1Q92551 441 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 POLIQ9UNA4 740 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 TTC41PQ6P2S7 1318 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 STAM2O75886 525 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 KRT3P12035 628 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 PPARGP37231 505 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-217ENST00000637988 TTC22Q5TAA0 569 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 SLFN12Q8IYM2 578 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 GOLGA5Q8TBA6 731 aa6.79□□□□□ -1.32
SCN1A-217ENST00000637988 C14orf93Q9H972 538 aaKnown RBP6.79□□□□□ -1.32
SCN1A-217ENST00000637988 KCNJ6P48051 423 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 GTF2IP78347 998 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 TICAM2Q86XR7 235 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 NUF2Q9BZD4 464 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 GRIN3BO60391 1043 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 CNGA4Q8IV77 575 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 CACTINQ8WUQ7 758 aaKnown RBP6.78□□□□□ -1.32
SCN1A-217ENST00000637988 PPME1Q9Y570 386 aa6.78□□□□□ -1.32
SCN1A-217ENST00000637988 DIXDC1Q155Q3 683 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms