RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 MTMR2Q13614 643 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 ATP2B3Q16720 1220 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 PLEKHH3Q7Z736 793 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 USP38Q8NB14 1042 aa20.29■□□□□ 0.84
CLN3-264ENST00000637985 DDX20Q9UHI6 824 aaKnown RBP20.29■□□□□ 0.84
CLN3-264ENST00000637985 MSCO60682 206 aa20.28■□□□□ 0.84
CLN3-264ENST00000637985 POTEEQ6S8J3 1075 aa20.28■□□□□ 0.84
CLN3-264ENST00000637985 MROH7-TTC4A0A0A0MT08 1334 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 RLFQ13129 1914 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 E9PSI1 815 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 MAP2K5Q13163 448 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 CCAR1Q8IX12 1150 aaKnown RBP20.27■□□□□ 0.84
CLN3-264ENST00000637985 BADQ92934 168 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 TMOD4Q9NZQ9 345 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 FLRT1Q9NZU1 646 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 ATP11BQ9Y2G3 1177 aa20.27■□□□□ 0.84
CLN3-264ENST00000637985 NCOR1O75376 2440 aa20.26■□□□□ 0.83
CLN3-264ENST00000637985 MFSD14CQ5VZR4 134 aa20.26■□□□□ 0.83
CLN3-264ENST00000637985 EDC3Q96F86 508 aaKnown RBP20.26■□□□□ 0.83
CLN3-264ENST00000637985 USP44Q9H0E7 712 aa20.26■□□□□ 0.83
CLN3-264ENST00000637985 ABCF2Q9UG63 623 aa20.26■□□□□ 0.83
CLN3-264ENST00000637985 PDS5AQ29RF7 1337 aaKnown RBP20.26■□□□□ 0.83
CLN3-264ENST00000637985 C19orf81C9J6K1 198 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 CCER2I3L3R5 266 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 CCDC102BQ68D86 513 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 SLC39A5Q6ZMH5 540 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 ZNF384Q8TF68 577 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 GTF3C2Q8WUA4 911 aaPredicted RBP20.25■□□□□ 0.83
CLN3-264ENST00000637985 FAM122AQ96E09 287 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 CEP126Q9P2H0 1117 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 HERC5Q9UII4 1024 aaKnown RBP20.25■□□□□ 0.83
CLN3-264ENST00000637985 FBXO3Q9UK99 471 aa20.25■□□□□ 0.83
CLN3-264ENST00000637985 CIAO1O76071 339 aa20.24■□□□□ 0.83
CLN3-264ENST00000637985 MAP4K4O95819 1239 aaPredicted RBP20.24■□□□□ 0.83
CLN3-264ENST00000637985 MECOMQ03112 1051 aa20.24■□□□□ 0.83
CLN3-264ENST00000637985 RASGRF1Q13972 1273 aa20.24■□□□□ 0.83
CLN3-264ENST00000637985 GRIN2CQ14957 1233 aa20.24■□□□□ 0.83
CLN3-264ENST00000637985 SPTY2D1Q68D10 685 aaPredicted RBP20.24■□□□□ 0.83
CLN3-264ENST00000637985 PRDM5Q9NQX1 630 aaPredicted RBP20.24■□□□□ 0.83
CLN3-264ENST00000637985 CNGA1P29973 690 aa20.23■□□□□ 0.83
CLN3-264ENST00000637985 ADORA1P30542 326 aa20.23■□□□□ 0.83
CLN3-264ENST00000637985 JAG1P78504 1218 aa20.23■□□□□ 0.83
CLN3-264ENST00000637985 SLFN5Q08AF3 891 aa20.23■□□□□ 0.83
CLN3-264ENST00000637985 SNX17Q15036 470 aa20.23■□□□□ 0.83
CLN3-264ENST00000637985 PAGR1Q9BTK6 254 aa20.23■□□□□ 0.83
CLN3-264ENST00000637985 IGHA2P01877 340 aa20.22■□□□□ 0.83
CLN3-264ENST00000637985 ASNSP08243 561 aa20.22■□□□□ 0.83
CLN3-264ENST00000637985 HOXC6P09630 235 aa20.22■□□□□ 0.83
CLN3-264ENST00000637985 GJC2Q5T442 439 aaPredicted RBP20.22■□□□□ 0.83
CLN3-264ENST00000637985 TRPV1Q8NER1 839 aa20.22■□□□□ 0.83
CLN3-264ENST00000637985 PDLIM7Q9NR12 457 aa20.22■□□□□ 0.83
CLN3-264ENST00000637985 TRIM43BA6NCK2 446 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 USP17L10C9JJH3 530 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 GLRX3O76003 335 aaKnown RBP20.21■□□□□ 0.83
CLN3-264ENST00000637985 TRIM60Q495X7 471 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 SH3RF1Q7Z6J0 888 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 MRPL50Q8N5N7 158 aaKnown RBP20.21■□□□□ 0.83
CLN3-264ENST00000637985 ARRDC4Q8NCT1 418 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 TRIM43Q96BQ3 446 aaPredicted RBP20.21■□□□□ 0.83
CLN3-264ENST00000637985 SIL1Q9H173 461 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 BDP1A6H8Y1 2624 aa20.21■□□□□ 0.83
CLN3-264ENST00000637985 SLC15A5A6NIM6 579 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 PTPREP23469 700 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 HOXD11P31277 338 aaPredicted RBP20.2■□□□□ 0.82
CLN3-264ENST00000637985 ATP2B2Q01814 1243 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 ERICH6Q7L0X2 663 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 ATXN2LQ8WWM7 1075 aaKnown RBP20.2■□□□□ 0.82
CLN3-264ENST00000637985 CWC22Q9HCG8 908 aaKnown RBP20.2■□□□□ 0.82
CLN3-264ENST00000637985 EMILIN3Q9NT22 766 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 PI4KBQ9UBF8 816 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 RABGAP1Q9Y3P9 1069 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 NDUFB9Q9Y6M9 179 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 PTPRCP08575 1304 aa20.2■□□□□ 0.82
CLN3-264ENST00000637985 CNMDO75829 334 aa20.19■□□□□ 0.82
CLN3-264ENST00000637985 CYBAP13498 195 aa20.19■□□□□ 0.82
CLN3-264ENST00000637985 CYP2C19P33261 490 aa20.19■□□□□ 0.82
CLN3-264ENST00000637985 MAP3K12Q12852 859 aa20.19■□□□□ 0.82
CLN3-264ENST00000637985 C1orf53Q5VUE5 145 aa20.19■□□□□ 0.82
CLN3-264ENST00000637985 RNPC3Q96LT9 517 aaKnown RBP20.19■□□□□ 0.82
CLN3-264ENST00000637985 SIPA1L1O43166 1804 aa20.18■□□□□ 0.82
CLN3-264ENST00000637985 IL15P40933 162 aaPredicted RBP20.18■□□□□ 0.82
CLN3-264ENST00000637985 EPHB4P54760 987 aa20.18■□□□□ 0.82
CLN3-264ENST00000637985 CCNA1P78396 465 aa20.18■□□□□ 0.82
CLN3-264ENST00000637985 NPLOC4Q8TAT6 608 aa20.18■□□□□ 0.82
CLN3-264ENST00000637985 GINM1Q9NU53 330 aa20.18■□□□□ 0.82
CLN3-264ENST00000637985 KBTBD13C9JR72 458 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 LDHCP07864 332 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 ITGB8P26012 769 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 GRB14Q14449 540 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 SHROOM1Q2M3G4 852 aaPredicted RBP20.17■□□□□ 0.82
CLN3-264ENST00000637985 METTL16Q86W50 562 aaKnown RBP20.17■□□□□ 0.82
CLN3-264ENST00000637985 TRMT2AQ8IZ69 625 aaKnown RBP20.17■□□□□ 0.82
CLN3-264ENST00000637985 ADAMTS19Q8TE59 1207 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 NSUN4Q96CB9 384 aaKnown RBP20.17■□□□□ 0.82
CLN3-264ENST00000637985 ASB2Q96Q27 587 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 DHX36Q9H2U1 1008 aaKnown RBP20.17■□□□□ 0.82
CLN3-264ENST00000637985 DNAJC18Q9H819 358 aa20.17■□□□□ 0.82
CLN3-264ENST00000637985 DNAJB2P25686 324 aa20.16■□□□□ 0.82
CLN3-264ENST00000637985 TIMM10P62072 90 aa20.16■□□□□ 0.82
CLN3-264ENST00000637985 GSTO1P78417 241 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms