RNA–Protein interactions for RNA: ENST00000637823.1

CLN6-223, Transcript of CLN6, transmembrane ER protein, human

TSL 5

Gene CLN6, Length 717 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN6-223	ENST00000637823	SHTN1	A0MZ66	631 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	CLRN2	A0PK11	232 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	TCP10L2	B9ZVM9	353 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	DHX16	O60231	1041 aa	Known RBP	13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	TSPY3	P0CV98	308 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	TSPY8	P0CW00	308 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	ST3GAL1	Q11201	340 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	NBPF9	Q3BBW0	867 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	C9orf131	Q5VYM1	1079 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	FAM83A	Q86UY5	434 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	ENAH	Q8N8S7	591 aa	Predicted RBP	13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	SLC44A5	Q8NCS7	719 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	NEDD1	Q8NHV4	660 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	ANKS1A	Q92625	1134 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	TNKS	O95271	1327 aa		13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	GOLGB1	Q14789	3259 aa	Known RBP	13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	POLR2A	P24928	1970 aa	Known RBP	13.8	□□□□□ -0.2
CLN6-223	ENST00000637823	DDTL	A6NHG4	134 aa	Predicted RBP	13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	TNNI2	P48788	182 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	RCAN1	P53805	252 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	SCRN1	Q12765	414 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	IFIT1B	Q5T764	474 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	RBM26	Q5T8P6	1007 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	APOA5	Q6Q788	366 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	SH3BP5L	Q7L8J4	393 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	METTL16	Q86W50	562 aa	Known RBP	13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	DGKH	Q86XP1	1220 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	SENP2	Q9HC62	589 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	GPRC5D	Q9NZD1	345 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	HPS5	Q9UPZ3	1129 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	SLC12A7	Q9Y666	1083 aa		13.79	□□□□□ -0.2
CLN6-223	ENST00000637823	GOLGA8B	A8MQT2	603 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	ZBTB43	O43298	467 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	CCT2	P78371	535 aa	Known RBP	13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	NUCB2	P80303	420 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	SAMD7	Q7Z3H4	446 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	CCDC17	Q96LX7	622 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	TRIM34	Q9BYJ4	488 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	VEZT	Q9HBM0	779 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	CNTNAP1	P78357	1384 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	MYH6	P13533	1939 aa		13.78	□□□□□ -0.2
CLN6-223	ENST00000637823	CALM1	P0DP23	149 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	CALM2	P0DP24	149 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	CALM3	P0DP25	149 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	PDIA4	P13667	645 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	GJB2	P29033	226 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	SHMT1	P34896	483 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	TNFAIP1	Q13829	316 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	PPP2R5B	Q15173	497 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	KIF4B	Q2VIQ3	1234 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	DPY19L2	Q6NUT2	758 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	CATIP	Q7Z7H3	387 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	ZNF654	Q8IZM8	581 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	GREB1L	Q9C091	1923 aa	Predicted RBP	13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	IL17RB	Q9NRM6	502 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	HERC5	Q9UII4	1024 aa	Known RBP	13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	MYH4	Q9Y623	1939 aa		13.77	□□□□□ -0.21
CLN6-223	ENST00000637823	NID2	Q14112	1375 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	PLIN4	Q96Q06	1357 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	ZC3H4	Q9UPT8	1303 aa	Known RBP	13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	NMT2	O60551	498 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	DDN	O94850	711 aa	Predicted RBP	13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	EGFR	P00533	1210 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	METAP2	P50579	478 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	HMGN5	P82970	282 aa	Known RBP	13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	PPP4R3B	Q5MIZ7	849 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	RCSD1	Q6JBY9	416 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	TATDN1	Q6P1N9	297 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	SMARCC2	Q8TAQ2	1214 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	CSRNP1	Q96S65	589 aa		13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	NCOA5	Q9HCD5	579 aa	Known RBP	13.76	□□□□□ -0.21
CLN6-223	ENST00000637823	CCDC196	A0A1B0GTZ2	297 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	GOLGA8A	A7E2F4	631 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	CPLX1	O14810	134 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	TBC1D12	O60347	775 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	CDKL5	O76039	1030 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	DDAH1	O94760	285 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	CTDNEP1	O95476	244 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	PDC	P20941	246 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	LMOD1	P29536	600 aa	Predicted RBP	13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	EPS15	P42566	896 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	NOV	P48745	357 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	CERKL	Q49MI3	558 aa	Predicted RBP	13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	CPLX2	Q6PUV4	134 aa	Known RBP	13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	FANCB	Q8NB91	859 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	NSUN7	Q8NE18	718 aa	Known RBP	13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	KAT14	Q9H8E8	782 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	PGAP2	Q9UHJ9	254 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	KIF3A	Q9Y496	699 aa		13.75	□□□□□ -0.21
CLN6-223	ENST00000637823	AKR1B1	P15121	316 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	RAB3GAP1	Q15042	981 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	RTN1	Q16799	776 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	MICU3	Q86XE3	530 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	MAP3K14	Q99558	947 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	DNAJC18	Q9H819	358 aa		13.74	□□□□□ -0.21
CLN6-223	ENST00000637823	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	13.74	□□□□□ -0.21

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