RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 RILPL2Q969X0 211 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 TRIM34Q9BYJ4 488 aa21.79■■□□□ 1.08
CLN3-243ENST00000635973 PHIPQ8WWQ0 1821 aa21.78■■□□□ 1.08
CLN3-243ENST00000635973 HTTP42858 3142 aa21.78■■□□□ 1.08
CLN3-243ENST00000635973 COL2A1P02458 1487 aaPredicted RBP21.78■■□□□ 1.08
CLN3-243ENST00000635973 FAM196BA6NMK8 535 aa21.78■■□□□ 1.08
CLN3-243ENST00000635973 MBD4O95243 580 aa21.78■■□□□ 1.08
CLN3-243ENST00000635973 SLURP2P0DP57 97 aa21.78■■□□□ 1.08
CLN3-243ENST00000635973 CRNKL1Q9BZJ0 848 aaKnown RBP21.78■■□□□ 1.08
CLN3-243ENST00000635973 DHX36Q9H2U1 1008 aaKnown RBP21.78■■□□□ 1.08
CLN3-243ENST00000635973 MYCP01106 439 aaPredicted RBP21.77■■□□□ 1.08
CLN3-243ENST00000635973 CHGBP05060 677 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 CYP2C8P10632 490 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 GPAT2Q6NUI2 795 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 MAPKAPK5Q8IW41 473 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 SMCR8Q8TEV9 937 aaPredicted RBP21.77■■□□□ 1.08
CLN3-243ENST00000635973 APPBP2Q92624 585 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 ZNF333Q96JL9 665 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 RIOK1Q9BRS2 568 aaKnown RBP21.77■■□□□ 1.08
CLN3-243ENST00000635973 ARMT1Q9H993 441 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 PI4KBQ9UBF8 816 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 HERC5Q9UII4 1024 aaKnown RBP21.77■■□□□ 1.08
CLN3-243ENST00000635973 MGAMO43451 1857 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 CDK5RAP2Q96SN8 1893 aa21.77■■□□□ 1.08
CLN3-243ENST00000635973 FLT1P17948 1338 aa21.77■■□□□ 1.07
CLN3-243ENST00000635973 LCORLQ8N3X6 602 aa21.76■■□□□ 1.07
CLN3-243ENST00000635973 RAET1EQ8TD07 263 aa21.76■■□□□ 1.07
CLN3-243ENST00000635973 SLC45A1Q9Y2W3 748 aa21.76■■□□□ 1.07
CLN3-243ENST00000635973 FCGRTP55899 365 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 TTC22Q5TAA0 569 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 CRACR2BQ8N4Y2 399 aaPredicted RBP21.75■■□□□ 1.07
CLN3-243ENST00000635973 SH3TC2Q8TF17 1288 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 TBC1D2Q9BYX2 928 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 SRRDQ9UH36 339 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 FOCADQ5VW36 1801 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 ADGRA2Q96PE1 1338 aa21.75■■□□□ 1.07
CLN3-243ENST00000635973 KIAA0100Q14667 2235 aaKnown RBP21.75■■□□□ 1.07
CLN3-243ENST00000635973 EN2P19622 333 aaPredicted RBP21.74■■□□□ 1.07
CLN3-243ENST00000635973 CCDC84Q86UT8 332 aaPredicted RBP21.74■■□□□ 1.07
CLN3-243ENST00000635973 TRIM47Q96LD4 638 aa21.74■■□□□ 1.07
CLN3-243ENST00000635973 PUS7LQ9H0K6 701 aaKnown RBP21.74■■□□□ 1.07
CLN3-243ENST00000635973 AS3MTQ9HBK9 375 aa21.74■■□□□ 1.07
CLN3-243ENST00000635973 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.74■■□□□ 1.07
CLN3-243ENST00000635973 PNMA3Q9UL41 463 aa21.74■■□□□ 1.07
CLN3-243ENST00000635973 MYPNQ86TC9 1320 aa21.74■■□□□ 1.07
CLN3-243ENST00000635973 OSBPP22059 807 aa21.73■■□□□ 1.07
CLN3-243ENST00000635973 CAP2P40123 477 aa21.73■■□□□ 1.07
CLN3-243ENST00000635973 SPP2Q13103 211 aa21.73■■□□□ 1.07
CLN3-243ENST00000635973 ZNF280CQ8ND82 737 aa21.73■■□□□ 1.07
CLN3-243ENST00000635973 SAP30BPQ9UHR5 308 aaKnown RBP21.73■■□□□ 1.07
CLN3-243ENST00000635973 AGTPBP1Q9UPW5 1226 aa21.73■■□□□ 1.07
CLN3-243ENST00000635973 USP17L5A8MUK1 530 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 HLA-DOAP06340 250 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 BCRP11274 1271 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 PABPC4Q13310 644 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-243ENST00000635973 FOXP4Q8IVH2 680 aaPredicted RBP21.72■■□□□ 1.07
CLN3-243ENST00000635973 SDR42E1Q8WUS8 393 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 OSBP2Q969R2 916 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 DDRGK1Q96HY6 314 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 PCDH10Q9P2E7 1040 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 BIN2Q9UBW5 565 aaPredicted RBP21.72■■□□□ 1.07
CLN3-243ENST00000635973 SLC4A4Q9Y6R1 1079 aa21.72■■□□□ 1.07
CLN3-243ENST00000635973 MYH1P12882 1939 aa21.71■■□□□ 1.07
CLN3-243ENST00000635973 M0R2C6 588 aa21.71■■□□□ 1.07
CLN3-243ENST00000635973 CTGFP29279 349 aa21.71■■□□□ 1.07
CLN3-243ENST00000635973 ZMYM1Q5SVZ6 1142 aa21.71■■□□□ 1.07
CLN3-243ENST00000635973 PROCA1Q8NCQ7 364 aaPredicted RBP21.71■■□□□ 1.07
CLN3-243ENST00000635973 CENPFP49454 3210 aa21.71■■□□□ 1.07
CLN3-243ENST00000635973 GPAA1O43292 621 aa21.7■■□□□ 1.06
CLN3-243ENST00000635973 GSPT1P15170 499 aaKnown RBP21.7■■□□□ 1.06
CLN3-243ENST00000635973 GRK4P32298 578 aa21.7■■□□□ 1.06
CLN3-243ENST00000635973 SKAP1Q86WV1 359 aa21.7■■□□□ 1.06
CLN3-243ENST00000635973 TICAM2Q86XR7 235 aa21.7■■□□□ 1.06
CLN3-243ENST00000635973 PALD1Q9ULE6 856 aa21.7■■□□□ 1.06
CLN3-243ENST00000635973 NAV1Q8NEY1 1877 aa21.7■■□□□ 1.06
CLN3-243ENST00000635973 PRKAB2O43741 272 aa21.69■■□□□ 1.06
CLN3-243ENST00000635973 POLR3DP05423 398 aaPredicted RBP21.69■■□□□ 1.06
CLN3-243ENST00000635973 ASNSP08243 561 aa21.69■■□□□ 1.06
CLN3-243ENST00000635973 HMGCS2P54868 508 aa21.69■■□□□ 1.06
CLN3-243ENST00000635973 SEC62Q99442 399 aaKnown RBP21.69■■□□□ 1.06
CLN3-243ENST00000635973 DIAPH3Q9NSV4 1193 aa21.69■■□□□ 1.06
CLN3-243ENST00000635973 MCM9Q9NXL9 1143 aa21.69■■□□□ 1.06
CLN3-243ENST00000635973 SIPA1L1O43166 1804 aa21.69■■□□□ 1.06
CLN3-243ENST00000635973 HIP1O00291 1037 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 TNPO2O14787 897 aaKnown RBP21.68■■□□□ 1.06
CLN3-243ENST00000635973 SDSP20132 328 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 UBXN2AP68543 259 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 TREML2Q5T2D2 321 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 AMOTL1Q8IY63 956 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 ANKRD13CQ8N6S4 541 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 STRBPQ96SI9 672 aaKnown RBP21.68■■□□□ 1.06
CLN3-243ENST00000635973 DCP1AQ9NPI6 582 aaPredicted RBP21.68■■□□□ 1.06
CLN3-243ENST00000635973 ATP8A2Q9NTI2 1148 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 TMOD4Q9NZQ9 345 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 LOC285556D6RIA3 1793 aa21.68■■□□□ 1.06
CLN3-243ENST00000635973 GNAT2P19087 354 aa21.67■■□□□ 1.06
CLN3-243ENST00000635973 PRKCZQ05513 592 aa21.67■■□□□ 1.06
CLN3-243ENST00000635973 NMIQ13287 307 aaPredicted RBP21.67■■□□□ 1.06
CLN3-243ENST00000635973 FAM227BQ96M60 508 aa21.67■■□□□ 1.06
CLN3-243ENST00000635973 HELLSQ9NRZ9 838 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms