RNA–Protein interactions for RNA: ENST00000635893.1

SCN1A-211, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 168 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-211ENST00000635893 ETF1P62495 437 aaKnown RBP6.32□□□□□ -1.4
SCN1A-211ENST00000635893 FGD1P98174 961 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 NKG7Q16617 165 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 KRTAP19-4Q3LI73 84 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 CDKAL1Q5VV42 579 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 ZNF746Q6NUN9 644 aaPredicted RBP6.32□□□□□ -1.4
SCN1A-211ENST00000635893 HID1Q8IV36 788 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 GAL3ST3Q96A11 431 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 KIRREL1Q96J84 757 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 FRMD6Q96NE9 622 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 PPP1R16BQ96T49 567 aa6.32□□□□□ -1.4
SCN1A-211ENST00000635893 CNTNAP4Q9C0A0 1308 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 H3BS24 57 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 RAP1GAPP47736 663 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 TMEM67Q5HYA8 995 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 WIPI1Q5MNZ9 446 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-211ENST00000635893 LETMD1Q6P1Q0 360 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.31□□□□□ -1.4
SCN1A-211ENST00000635893 CCDC120Q96HB5 630 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 TTF2Q9UNY4 1162 aaKnown RBP6.31□□□□□ -1.4
SCN1A-211ENST00000635893 ST14Q9Y5Y6 855 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 CAPN6Q9Y6Q1 641 aa6.31□□□□□ -1.4
SCN1A-211ENST00000635893 TSPAN15O95858 294 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 CST3P01034 146 aaPredicted RBP6.3□□□□□ -1.4
SCN1A-211ENST00000635893 TTBK2Q6IQ55 1244 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 MPZL3Q6UWV2 235 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 THAP5Q7Z6K1 395 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 RIN3Q8TB24 985 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 COX4I2Q96KJ9 171 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 TOX2Q96NM4 488 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 C19orf73Q9NVV2 129 aa6.3□□□□□ -1.4
SCN1A-211ENST00000635893 LDHBP07195 334 aaKnown RBP6.29□□□□□ -1.4
SCN1A-211ENST00000635893 CYP7A1P22680 504 aa6.29□□□□□ -1.4
SCN1A-211ENST00000635893 LCE4AQ5TA78 99 aa6.29□□□□□ -1.4
SCN1A-211ENST00000635893 PRAMEF13Q5VWM6 474 aa6.29□□□□□ -1.4
SCN1A-211ENST00000635893 PRR23BQ6ZRT6 265 aa6.29□□□□□ -1.4
SCN1A-211ENST00000635893 CILP2Q8IUL8 1156 aa6.29□□□□□ -1.4
SCN1A-211ENST00000635893 TACC3Q9Y6A5 838 aa6.29□□□□□ -1.4
SCN1A-211ENST00000635893 CBX7O95931 251 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 P4HBP07237 508 aaKnown RBP6.28□□□□□ -1.4
SCN1A-211ENST00000635893 GRK4P32298 578 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 KIR3DL1P43629 444 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 CDK8P49336 464 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 RPS26P62854 115 aaKnown RBP6.28□□□□□ -1.4
SCN1A-211ENST00000635893 SYDE1Q6ZW31 735 aaPredicted RBP6.28□□□□□ -1.4
SCN1A-211ENST00000635893 UBE2FQ969M7 185 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 ALPK1Q96QP1 1244 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 IVNS1ABPQ9Y6Y0 642 aa6.28□□□□□ -1.4
SCN1A-211ENST00000635893 LMNB1P20700 586 aa6.27□□□□□ -1.41
SCN1A-211ENST00000635893 EIF4BP23588 611 aaKnown RBP6.27□□□□□ -1.41
SCN1A-211ENST00000635893 GNA15P30679 374 aa6.27□□□□□ -1.41
SCN1A-211ENST00000635893 XAGE3Q8WTP9 111 aa6.27□□□□□ -1.41
SCN1A-211ENST00000635893 KRTAP4-9Q9BYQ8 210 aa6.27□□□□□ -1.41
SCN1A-211ENST00000635893 ZSWIM5Q9P217 1185 aa6.27□□□□□ -1.41
SCN1A-211ENST00000635893 GFRA2O00451 464 aa6.26□□□□□ -1.41
SCN1A-211ENST00000635893 CFPP27918 469 aa6.26□□□□□ -1.41
SCN1A-211ENST00000635893 KCNA1Q09470 495 aa6.26□□□□□ -1.41
SCN1A-211ENST00000635893 CCDC85BQ15834 202 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-211ENST00000635893 CDH24Q86UP0 819 aa6.26□□□□□ -1.41
SCN1A-211ENST00000635893 ANKLE2Q86XL3 938 aa6.26□□□□□ -1.41
SCN1A-211ENST00000635893 FBXO15Q8NCQ5 510 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-211ENST00000635893 ZSCAN18Q8TBC5 510 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-211ENST00000635893 PIWIL2Q8TC59 973 aaKnown RBP6.26□□□□□ -1.41
SCN1A-211ENST00000635893 RAC2P15153 192 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 TNK2Q07912 1038 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 SEPT6Q14141 434 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 TMPRSS7Q7RTY8 843 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 TTC6Q86TZ1 520 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 MRPL41Q8IXM3 137 aaKnown RBP6.25□□□□□ -1.41
SCN1A-211ENST00000635893 SLAMF8Q9P0V8 285 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 PCDHB5Q9Y5E4 795 aa6.25□□□□□ -1.41
SCN1A-211ENST00000635893 ETV3P41162 512 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 SLC6A19Q695T7 634 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 AGMOQ6ZNB7 445 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 C1QL4Q86Z23 238 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 LRRC56Q8IYG6 542 aaPredicted RBP6.24□□□□□ -1.41
SCN1A-211ENST00000635893 ABHD4Q8TB40 342 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 DIRC2Q96SL1 478 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 NSUN3Q9H649 340 aaKnown RBP6.24□□□□□ -1.41
SCN1A-211ENST00000635893 TJP2Q9UDY2 1190 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 AK5Q9Y6K8 562 aa6.24□□□□□ -1.41
SCN1A-211ENST00000635893 NFIBO00712 420 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 PRPF40AO75400 957 aaKnown RBP6.23□□□□□ -1.41
SCN1A-211ENST00000635893 ESR1P03372 595 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 PGRP06401 933 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 C1QTNF9P0C862 333 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 LIG3P49916 1009 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 PDE4BQ07343 736 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 SIAH1Q8IUQ4 282 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 TMEM87BQ96K49 555 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 MIR1-1HGQ9H1L0 117 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 TMEM59LQ9UK28 342 aa6.23□□□□□ -1.41
SCN1A-211ENST00000635893 DNAJC25-GNG10A0A024R161 153 aa6.22□□□□□ -1.41
SCN1A-211ENST00000635893 KRT1P04264 644 aa6.22□□□□□ -1.41
SCN1A-211ENST00000635893 DPH2Q9BQC3 489 aaPredicted RBP6.22□□□□□ -1.41
SCN1A-211ENST00000635893 EPB41L4BQ9H329 900 aa6.22□□□□□ -1.41
SCN1A-211ENST00000635893 TMEM253P0C7T8 217 aa6.21□□□□□ -1.42
SCN1A-211ENST00000635893 MAP3K11Q16584 847 aa6.21□□□□□ -1.42
SCN1A-211ENST00000635893 TSNAXIP1Q2TAA8 658 aa6.21□□□□□ -1.42
SCN1A-211ENST00000635893 RALGPS1Q5JS13 557 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms