RNA–Protein interactions for RNA: ENST00000625171.3

LINC00963-220, long intergenic non-protein coding RNA 963, humanhuman

TSL 5

Gene LINC00963, Length 830 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00963-220ENST00000625171 SERPINB13Q9UIV8 391 aa13.8□□□□□ -0.2
LINC00963-220ENST00000625171 HPS5Q9UPZ3 1129 aa13.8□□□□□ -0.2
LINC00963-220ENST00000625171 ZBTB12Q9Y330 459 aaPredicted RBP13.8□□□□□ -0.2
LINC00963-220ENST00000625171 LAMB1P07942 1786 aa13.8□□□□□ -0.2
LINC00963-220ENST00000625171 PLIN4Q96Q06 1357 aa13.8□□□□□ -0.2
LINC00963-220ENST00000625171 IQCA1LA6NCM1 817 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 SMIM22K7EJ46 135 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 HLA-DOAP06340 250 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 CALM1P0DP23 149 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 CALM2P0DP24 149 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 CALM3P0DP25 149 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 PDCP20941 246 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 HMGN5P82970 282 aaKnown RBP13.79□□□□□ -0.2
LINC00963-220ENST00000625171 SCRN1Q12765 414 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 NFIAQ12857 509 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 WTAPQ15007 396 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 RAB3GAP1Q15042 981 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 PPP4R3BQ5MIZ7 849 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 TATDN1Q6P1N9 297 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 LRRC2Q9BYS8 371 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 TDRD3Q9H7E2 651 aaKnown RBP13.79□□□□□ -0.2
LINC00963-220ENST00000625171 MKNK2Q9HBH9 465 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 MYOZ2Q9NPC6 264 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 TMOD2Q9NZR1 351 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 ZNF70Q9UC06 446 aaPredicted RBP13.79□□□□□ -0.2
LINC00963-220ENST00000625171 SMC3Q9UQE7 1217 aa13.79□□□□□ -0.2
LINC00963-220ENST00000625171 KLF18A0A0U1RQI7 1052 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 CCDC196A0A1B0GTZ2 297 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 WNT10BO00744 389 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 MYO1BO43795 1136 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 TBC1D12O60347 775 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 RANBP6O60518 1105 aaKnown RBP13.78□□□□□ -0.2
LINC00963-220ENST00000625171 CTCFP49711 727 aaPredicted RBP13.78□□□□□ -0.2
LINC00963-220ENST00000625171 SYNE3Q6ZMZ3 975 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 LDHDQ86WU2 507 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 CCDC83Q8IWF9 413 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 ENAHQ8N8S7 591 aaPredicted RBP13.78□□□□□ -0.2
LINC00963-220ENST00000625171 TOMM22Q9NS69 142 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 KIF3AQ9Y496 699 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 TNKSO95271 1327 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 PASKQ96RG2 1323 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 ECM29Q5VYK3 1845 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 NAV1Q8NEY1 1877 aa13.78□□□□□ -0.2
LINC00963-220ENST00000625171 CCDC69A6NI79 296 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 TSPY2A6NKD2 308 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 FOXN1O15353 648 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 ZBTB43O43298 467 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 DDAH1O94760 285 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 TFAP4Q01664 338 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 RRP12Q5JTH9 1297 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 RCSD1Q6JBY9 416 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 NOL8Q76FK4 1167 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 SPRYD3Q8NCJ5 442 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 NSUN7Q8NE18 718 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 DYNLL2Q96FJ2 89 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 L3MBTL3Q96JM7 780 aaPredicted RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 LARP6Q9BRS8 491 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 GPHNQ9NQX3 736 aaPredicted RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 IL17RBQ9NRM6 502 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 PGAP2Q9UHJ9 254 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 SAP30BPQ9UHR5 308 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 HERC5Q9UII4 1024 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 CNOT7Q9UIV1 285 aaKnown RBP13.77□□□□□ -0.21
LINC00963-220ENST00000625171 PCDHAC2Q9Y5I4 1007 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 SLC12A7Q9Y666 1083 aa13.77□□□□□ -0.21
LINC00963-220ENST00000625171 MYH1P12882 1939 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 IGKV6D-41A0A0C4DH26 115 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 H7C1D1 291 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 PRDM1O75626 825 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 CDKL5O76039 1030 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 DDNO94850 711 aaPredicted RBP13.76□□□□□ -0.21
LINC00963-220ENST00000625171 CTDNEP1O95476 244 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 BRD1O95696 1058 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 GMPSP49915 693 aaPredicted RBP13.76□□□□□ -0.21
LINC00963-220ENST00000625171 EVX2Q03828 476 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 TROAPQ12815 778 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 PICALMQ13492 652 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 TNFAIP1Q13829 316 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 CPLX2Q6PUV4 134 aaKnown RBP13.76□□□□□ -0.21
LINC00963-220ENST00000625171 SH3BP5LQ7L8J4 393 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 NECAB1Q8N987 351 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 FAM217BQ9NTX9 383 aaPredicted RBP13.76□□□□□ -0.21
LINC00963-220ENST00000625171 GPRC5DQ9NZD1 345 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 SYNPO2Q9UMS6 1093 aa13.76□□□□□ -0.21
LINC00963-220ENST00000625171 DDTLA6NHG4 134 aaPredicted RBP13.75□□□□□ -0.21
LINC00963-220ENST00000625171 TSPY3P0CV98 308 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 TSPY8P0CW00 308 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 IFNAR1P17181 557 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 GJB2P29033 226 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 SHMT1P34896 483 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 TNNI2P48788 182 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 METAP2P50579 478 aaKnown RBP eCLIP13.75□□□□□ -0.21
LINC00963-220ENST00000625171 NTRK3Q16288 839 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 IFIT1BQ5T764 474 aaKnown RBP13.75□□□□□ -0.21
LINC00963-220ENST00000625171 ZFPM1Q8IX07 1006 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 ZNF654Q8IZM8 581 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 FANCBQ8NB91 859 aa13.75□□□□□ -0.21
LINC00963-220ENST00000625171 WDR33Q9C0J8 1336 aaKnown RBP13.74□□□□□ -0.21
LINC00963-220ENST00000625171 ZNF541Q9H0D2 1346 aa13.74□□□□□ -0.21
LINC00963-220ENST00000625171 STK36Q9NRP7 1315 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms