RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 WDR18Q9BV38 432 aa17.9■□□□□ 0.46
LINC00643-205ENST00000623219 PNMA3Q9UL41 463 aa17.9■□□□□ 0.46
LINC00643-205ENST00000623219 ZBTB21Q9ULJ3 1066 aa17.9■□□□□ 0.46
LINC00643-205ENST00000623219 KIAA0100Q14667 2235 aaKnown RBP17.89■□□□□ 0.45
LINC00643-205ENST00000623219 GDF11O95390 407 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 BCRP11274 1271 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 MLLT1Q03111 559 aaPredicted RBP17.89■□□□□ 0.45
LINC00643-205ENST00000623219 UBE3CQ15386 1083 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 SH3D19Q5HYK7 790 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 TATDN1Q6P1N9 297 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 ARHGAP39Q9C0H5 1083 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 RLFQ13129 1914 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 TTC41PQ6P2S7 1318 aa17.89■□□□□ 0.45
LINC00643-205ENST00000623219 COL11A1P12107 1806 aaPredicted RBP17.88■□□□□ 0.45
LINC00643-205ENST00000623219 HMGCS2P54868 508 aa17.88■□□□□ 0.45
LINC00643-205ENST00000623219 AAMPQ13685 434 aa17.88■□□□□ 0.45
LINC00643-205ENST00000623219 TREML2Q5T2D2 321 aa17.88■□□□□ 0.45
LINC00643-205ENST00000623219 SMCR8Q8TEV9 937 aaPredicted RBP17.88■□□□□ 0.45
LINC00643-205ENST00000623219 SDR42E1Q8WUS8 393 aa17.88■□□□□ 0.45
LINC00643-205ENST00000623219 DCP1AQ9NPI6 582 aaPredicted RBP17.88■□□□□ 0.45
LINC00643-205ENST00000623219 MKI67P46013 3256 aaKnown RBP17.87■□□□□ 0.45
LINC00643-205ENST00000623219 MBD4O95243 580 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 POLR3DP05423 398 aaPredicted RBP17.87■□□□□ 0.45
LINC00643-205ENST00000623219 PLCD1P51178 756 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 PRMT2P55345 433 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 BACE1P56817 501 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 JAG1P78504 1218 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 PABPC4Q13310 644 aaKnown RBP eCLIP17.87■□□□□ 0.45
LINC00643-205ENST00000623219 MTMR2Q13614 643 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 SHROOM1Q2M3G4 852 aaPredicted RBP17.87■□□□□ 0.45
LINC00643-205ENST00000623219 ARMC5Q96C12 935 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 ARMT1Q9H993 441 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 ATP8A2Q9NTI2 1148 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 MCM9Q9NXL9 1143 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 PTCH2Q9Y6C5 1203 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 PDE4DIPQ5VU43 2346 aa17.87■□□□□ 0.45
LINC00643-205ENST00000623219 C19orf81C9J6K1 198 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 GH2P01242 217 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 PSMC4P43686 418 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 GABPAQ06546 454 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 SLFNL1Q499Z3 407 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 TSHZ3Q63HK5 1081 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 KBTBD3Q8NAB2 608 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 TAOK2Q9UL54 1235 aa17.86■□□□□ 0.45
LINC00643-205ENST00000623219 USP17L10C9JJH3 530 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 ERC2O15083 957 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 CTGFP29279 349 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 SHMT1P34896 483 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 HDAC1Q13547 482 aaPredicted RBP17.85■□□□□ 0.45
LINC00643-205ENST00000623219 CERKLQ49MI3 558 aaPredicted RBP17.85■□□□□ 0.45
LINC00643-205ENST00000623219 SLC9C1Q4G0N8 1177 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 GCC1Q96CN9 775 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 TRIM47Q96LD4 638 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 TMOD4Q9NZQ9 345 aa17.85■□□□□ 0.45
LINC00643-205ENST00000623219 CHGBP05060 677 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 OSBPP22059 807 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 HOXD10P28358 340 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 FCGRTP55899 365 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 FAM110CQ1W6H9 321 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 ABCB5Q2M3G0 1257 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 DDRGK1Q96HY6 314 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 SRRDQ9UH36 339 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 FRMPD3Q5JV73 1810 aa17.84■□□□□ 0.45
LINC00643-205ENST00000623219 MYPNQ86TC9 1320 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 SALL3Q9BXA9 1300 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 GLRX3O76003 335 aaKnown RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 FMNL1O95466 1100 aaPredicted RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 ZFYP08048 801 aaPredicted RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 MX1P20591 662 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 GCLCP48506 637 aaPredicted RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 NBPF11Q86T75 865 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 AMOTL1Q8IY63 956 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 PI4K2BQ8TCG2 481 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 ZNF333Q96JL9 665 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 PUS7LQ9H0K6 701 aaKnown RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 ASCC2Q9H1I8 757 aaPredicted RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 CABP5Q9NP86 173 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 ZBTB47Q9UFB7 747 aaPredicted RBP17.83■□□□□ 0.44
LINC00643-205ENST00000623219 SWAP70Q9UH65 585 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 LAMA4Q16363 1823 aa17.83■□□□□ 0.44
LINC00643-205ENST00000623219 PRKAB2O43741 272 aa17.82■□□□□ 0.44
LINC00643-205ENST00000623219 ECM2O94769 699 aaPredicted RBP17.82■□□□□ 0.44
LINC00643-205ENST00000623219 IRX3P78415 501 aaPredicted RBP17.82■□□□□ 0.44
LINC00643-205ENST00000623219 EVX2Q03828 476 aa17.82■□□□□ 0.44
LINC00643-205ENST00000623219 LRRFIP1Q32MZ4 808 aaKnown RBP17.82■□□□□ 0.44
LINC00643-205ENST00000623219 ANKRD13CQ8N6S4 541 aa17.82■□□□□ 0.44
LINC00643-205ENST00000623219 APPBP2Q92624 585 aa17.82■□□□□ 0.44
LINC00643-205ENST00000623219 FEZ1Q99689 392 aa17.82■□□□□ 0.44
LINC00643-205ENST00000623219 SLC4A4Q9Y6R1 1079 aa17.82■□□□□ 0.44
LINC00643-205ENST00000623219 CYP2D6P10635 497 aa17.81■□□□□ 0.44
LINC00643-205ENST00000623219 HOXA7P31268 230 aaPredicted RBP17.81■□□□□ 0.44
LINC00643-205ENST00000623219 RAB3GAP1Q15042 981 aa17.81■□□□□ 0.44
LINC00643-205ENST00000623219 USP17L2Q6R6M4 530 aa17.81■□□□□ 0.44
LINC00643-205ENST00000623219 OTUD7AQ8TE49 926 aaPredicted RBP17.81■□□□□ 0.44
LINC00643-205ENST00000623219 C12orf42Q96LP6 360 aa17.81■□□□□ 0.44
LINC00643-205ENST00000623219 ZNF236Q9UL36 1845 aa17.81■□□□□ 0.44
LINC00643-205ENST00000623219 ZNFX1Q9P2E3 1918 aaKnown RBP17.8■□□□□ 0.44
LINC00643-205ENST00000623219 RNF113AO15541 343 aaKnown RBP17.8■□□□□ 0.44
LINC00643-205ENST00000623219 USP14P54578 494 aa17.8■□□□□ 0.44
LINC00643-205ENST00000623219 RAET1EQ8TD07 263 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms