RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 NOLC1Q14978 699 aaKnown RBP eCLIP12.26□□□□□ -0.453e-6■■□□□ 12.3
CUX1-221ENST00000622516 SAFBQ15424 915 aaKnown RBP eCLIP12.26□□□□□ -0.45
CUX1-221ENST00000622516 EARS2Q5JPH6 523 aaKnown RBP12.26□□□□□ -0.45
CUX1-221ENST00000622516 SH3RF3Q8TEJ3 882 aaPredicted RBP12.26□□□□□ -0.45
CUX1-221ENST00000622516 TNRC6CQ9HCJ0 1690 aaKnown RBP12.26□□□□□ -0.45
CUX1-221ENST00000622516 DEXIO95424 95 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 AKAP17AQ02040 695 aaKnown RBP12.26□□□□□ -0.45
CUX1-221ENST00000622516 PNOCQ13519 176 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 ARID5BQ14865 1188 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 ZRSR1Q15695 479 aaKnown RBP12.26□□□□□ -0.45
CUX1-221ENST00000622516 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.26□□□□□ -0.45
CUX1-221ENST00000622516 CATIPQ7Z7H3 387 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 ANO10Q9NW15 660 aa12.26□□□□□ -0.45
CUX1-221ENST00000622516 CCDC196A0A1B0GTZ2 297 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 SEMA3EO15041 775 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 FOXN1O15353 648 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 SERPINB2P05120 415 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 LDHBP07195 334 aaKnown RBP12.25□□□□□ -0.45
CUX1-221ENST00000622516 USP5P45974 858 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 TROAPQ12815 778 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 CCDC144BQ3MJ40 725 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 PLA2G4DQ86XP0 818 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 PDILTQ8N807 584 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 SLC44A5Q8NCS7 719 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 CLIP2Q9UDT6 1046 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 SAP30BPQ9UHR5 308 aaKnown RBP12.25□□□□□ -0.45
CUX1-221ENST00000622516 ECM29Q5VYK3 1845 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 TSPY2A6NKD2 308 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 UFL1O94874 794 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 LONRF3Q496Y0 759 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 TGFBRAP1Q8WUH2 860 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 WASF1Q92558 559 aa12.25□□□□□ -0.45
CUX1-221ENST00000622516 PKN1Q16512 942 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 OLFM4Q6UX06 510 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 USP49Q70CQ1 688 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 TRPC5Q9UL62 973 aaPredicted RBP12.24□□□□□ -0.45
CUX1-221ENST00000622516 STK36Q9NRP7 1315 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 IRS2Q9Y4H2 1338 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 WNT7AO00755 349 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 ADAMTS3O15072 1205 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 MAPKAPK5Q8IW41 473 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 CEP57L1Q8IYX8 460 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 TIAM2Q8IVF5 1701 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 FILIP1Q7Z7B0 1213 aa12.24□□□□□ -0.45
CUX1-221ENST00000622516 XDHP47989 1333 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 USP17L3A6NCW0 530 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 USP17L4A6NCW7 530 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 RRP9O43818 475 aaKnown RBP12.23□□□□□ -0.45
CUX1-221ENST00000622516 BRD2P25440 801 aaKnown RBP12.23□□□□□ -0.45
CUX1-221ENST00000622516 TFAP4Q01664 338 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 USP17L1Q7RTZ2 530 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 GRAMD1CQ8IYS0 662 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 SRBD1Q8N5C6 995 aaKnown RBP12.23□□□□□ -0.45
CUX1-221ENST00000622516 KCNH3Q9ULD8 1083 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.23□□□□□ -0.453e-7■■■□□ 17.9
CUX1-221ENST00000622516 TAF1LQ8IZX4 1826 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 GOLGA6L6A8MZA4 724 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 RIMBP2O15034 1052 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 PPP6R2O75170 966 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 PLCD1P51178 756 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 DDR1Q08345 913 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 FUT2Q10981 343 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 PTPN21Q16825 1174 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 HSP90AA4PQ58FG1 418 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 RASGRP2Q7LDG7 609 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 FOXP4Q8IVH2 680 aaPredicted RBP12.23□□□□□ -0.45
CUX1-221ENST00000622516 JMYQ8N9B5 988 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 ATP8A2Q9NTI2 1148 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 NHSQ6T4R5 1651 aa12.23□□□□□ -0.45
CUX1-221ENST00000622516 ZNF831Q5JPB2 1677 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 THSD7AQ9UPZ6 1657 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 KRI1Q8N9T8 703 aaKnown RBP12.22□□□□□ -0.45
CUX1-221ENST00000622516 DUOX1Q9NRD9 1551 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 C6orf229H3BNL8 230 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 RESP18Q5W5W9 173 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 PROM2Q8N271 834 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 CNNM3Q8NE01 707 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 KIAA1524Q8TCG1 905 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 CACTINQ8WUQ7 758 aaKnown RBP12.22□□□□□ -0.45
CUX1-221ENST00000622516 RNF26Q9BY78 433 aaPredicted RBP12.22□□□□□ -0.45
CUX1-221ENST00000622516 MKNK2Q9HBH9 465 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 CD209Q9NNX6 404 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 POLLQ9UGP5 575 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 HPSEQ9Y251 543 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 LEMD3Q9Y2U8 911 aa12.22□□□□□ -0.45
CUX1-221ENST00000622516 F8W031 263 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 RGL2O15211 777 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 POLR2DO15514 142 aaKnown RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 ONECUT3O60422 494 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 FGRP09769 529 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 PDE4BQ07343 736 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 METTL16Q86W50 562 aaKnown RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 CTCFLQ8NI51 663 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 FOXP1Q9H334 677 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 IL17RBQ9NRM6 502 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 MYH6P13533 1939 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 SBF2Q86WG5 1849 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 CAVIN2O95810 425 aa12.21□□□□□ -0.45
CUX1-221ENST00000622516 LMOD1P29536 600 aaPredicted RBP12.21□□□□□ -0.45
CUX1-221ENST00000622516 ST5P78524 1137 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms