RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 GNL3LQ9NVN8 582 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 CGNQ9P2M7 1197 aaKnown RBP14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 SLIT2O94813 1529 aa14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 CAVIN4Q5BKX8 364 aa14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 SMAP1Q8IYB5 467 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 TMTC2Q8N394 836 aa14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 ENAHQ8N8S7 591 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 FOXP1Q9H334 677 aaPredicted RBP14.8□□□□□ -0.04
CCDC88A-214ENST00000621814 PTPREP23469 700 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 KLRK1P26718 216 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 KMT5BQ4FZB7 885 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 PARP10Q53GL7 1025 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 MARCH10Q8NA82 808 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 ZSCAN10Q96SZ4 725 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 CDC5LQ99459 802 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 AATFQ9NY61 560 aaKnown RBP eCLIP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 XIRP1Q702N8 1843 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 STK36Q9NRP7 1315 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 USP17L12C9JPN9 530 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 USP17L21D6R901 530 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 URI1O94763 535 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 CATIPQ7Z7H3 387 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 WNT7AO00755 349 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 MDM2Q00987 491 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 VSTM4Q8IW00 320 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 CELF1Q92879 486 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 SHISA4Q96DD7 197 aa14.79□□□□□ -0.04
CCDC88A-214ENST00000621814 PNPLA7Q6ZV29 1317 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 ZSCAN20P17040 1043 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 FBXO38Q6PIJ6 1188 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 INTS13Q9NVM9 706 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 MYH7P12883 1935 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 C4AP0C0L4 1744 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 C4BP0C0L5 1744 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 VWA3AA6NCI4 1184 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 TRIM75PA6NK02 468 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 XBP1P17861 261 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 AK7Q96M32 723 aa14.78□□□□□ -0.04
CCDC88A-214ENST00000621814 IQCA1Q86XH1 822 aa14.77□□□□□ -0.04
CCDC88A-214ENST00000621814 ERO1AQ96HE7 468 aa14.77□□□□□ -0.04
CCDC88A-214ENST00000621814 DESI2Q9BSY9 194 aa14.77□□□□□ -0.04
CCDC88A-214ENST00000621814 LRP6O75581 1613 aa14.77□□□□□ -0.04
CCDC88A-214ENST00000621814 A0A087X0B3 334 aa14.77□□□□□ -0.05
CCDC88A-214ENST00000621814 CEP131Q9UPN4 1083 aa14.77□□□□□ -0.05
CCDC88A-214ENST00000621814 PSDA5PKW4 1024 aaPredicted RBP14.77□□□□□ -0.05
CCDC88A-214ENST00000621814 KRT2P35908 639 aa14.77□□□□□ -0.05
CCDC88A-214ENST00000621814 SYMPKQ92797 1274 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-214ENST00000621814 SRPRBQ9Y5M8 271 aaKnown RBP14.77□□□□□ -0.05
CCDC88A-214ENST00000621814 ITGB4P16144 1822 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 KIF2AO00139 706 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 CYP2D6P10635 497 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 SEC23AQ15436 765 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 BAG1Q99933 345 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 RIOK1Q9BRS2 568 aaKnown RBP14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 BLZF1Q9H2G9 400 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 MINPP1Q9UNW1 487 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 NUP98P52948 1817 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 FAM237AA0A1B0GTK4 181 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 VEGFAP15692 232 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 PKN1Q16512 942 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 FAM84BQ96KN1 310 aaPredicted RBP14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 ZNF652Q9Y2D9 606 aa14.76□□□□□ -0.05
CCDC88A-214ENST00000621814 CDC25AP30304 524 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 CTR9Q6PD62 1173 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 ACTN4O43707 911 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 MCM7P33993 719 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 ETF1P62495 437 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 KARSQ15046 597 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 PIK3AP1Q6ZUJ8 805 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 TOGARAM2Q6ZUX3 1019 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 ZNF397Q8NF99 534 aaPredicted RBP14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 EPC1Q9H2F5 836 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 OGFRQ9NZT2 677 aa14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 BAZ2BQ9UIF8 2168 aaKnown RBP14.75□□□□□ -0.05
CCDC88A-214ENST00000621814 PRDX5P30044 214 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 GNG11P61952 73 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 SYCP1Q15431 976 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 ARHGAP29Q52LW3 1261 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MLKLQ8NB16 471 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MNS1Q8NEH6 495 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 ZNF384Q8TF68 577 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 ZBTB9Q96C00 473 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MED15Q96RN5 788 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 RNF26Q9BY78 433 aaPredicted RBP14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MAPK8IP1Q9UQF2 711 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 TEX33O43247 280 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 NLRP5P59047 1200 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MORC3Q14149 939 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 SPECC1LQ69YQ0 1117 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 FEZ1Q99689 392 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 DACH1Q9UI36 760 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 PPP2R2CQ9Y2T4 447 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.74□□□□□ -0.052e-8■■■□□ 15.7
CCDC88A-214ENST00000621814 DISP2A7MBM2 1401 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 RTL9Q8NET4 1388 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MECOMQ03112 1051 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 PTGDRQ13258 359 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 MTF1Q14872 753 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 SLC51AQ86UW1 340 aa14.74□□□□□ -0.05
CCDC88A-214ENST00000621814 BRMS1Q9HCU9 246 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms