RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 SIPA1L1O43166 1804 aa14.5□□□□□ -0.09
UPF3B-204ENST00000619445 USP17L10C9JJH3 530 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 SLURP2P0DP57 97 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 USP5P45974 858 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 ADGRA1Q86SQ6 560 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 KIF1BPQ96EK5 621 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 ASCC2Q9H1I8 757 aaPredicted RBP14.49□□□□□ -0.09
UPF3B-204ENST00000619445 EHD4Q9H223 541 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 PALD1Q9ULE6 856 aa14.49□□□□□ -0.09
UPF3B-204ENST00000619445 MTMR2Q13614 643 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 HABP4Q5JVS0 413 aaKnown RBP14.48□□□□□ -0.09
UPF3B-204ENST00000619445 CCDC84Q86UT8 332 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-204ENST00000619445 MAGEB6Q8N7X4 407 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 RHPN1Q8TCX5 695 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.48□□□□□ -0.09
UPF3B-204ENST00000619445 TLR7Q9NYK1 1049 aaKnown RBP14.48□□□□□ -0.09
UPF3B-204ENST00000619445 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.48□□□□□ -0.09
UPF3B-204ENST00000619445 MORF4L1Q9UBU8 362 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 SERPINB13Q9UIV8 391 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 ZBTB21Q9ULJ3 1066 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 GABRQQ9UN88 632 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 EXOC6BQ9Y2D4 811 aa14.48□□□□□ -0.09
UPF3B-204ENST00000619445 RAB11FIP3O75154 756 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 SGPL1O95470 568 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 INHAP05111 366 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 PANK1Q8TE04 598 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 U2AF1L4Q8WU68 220 aaKnown RBP14.47□□□□□ -0.09
UPF3B-204ENST00000619445 SHISA4Q96DD7 197 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 IFIT2P09913 472 aaKnown RBP14.47□□□□□ -0.09
UPF3B-204ENST00000619445 USP14P54578 494 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 RRP1BQ14684 758 aaKnown RBP14.47□□□□□ -0.09
UPF3B-204ENST00000619445 USP17L2Q6R6M4 530 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 TRMT44Q8IYL2 757 aaKnown RBP14.47□□□□□ -0.09
UPF3B-204ENST00000619445 SOCS4Q8WXH5 440 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 DNAJC18Q9H819 358 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 NR2E3Q9Y5X4 410 aa14.47□□□□□ -0.09
UPF3B-204ENST00000619445 TRIOBPQ9H2D6 2365 aa14.46□□□□□ -0.09
UPF3B-204ENST00000619445 FARP2O94887 1054 aaPredicted RBP14.46□□□□□ -0.1
UPF3B-204ENST00000619445 HMGCRP04035 888 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 MAPK4P31152 587 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 DYNLL1P63167 89 aaKnown RBP14.46□□□□□ -0.1
UPF3B-204ENST00000619445 TATDN1Q6P1N9 297 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 UBE2Q1Q7Z7E8 422 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 CCAR1Q8IX12 1150 aaKnown RBP14.46□□□□□ -0.1
UPF3B-204ENST00000619445 MIGA1Q8NAN2 632 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 GPRC5AQ8NFJ5 357 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 DPF3Q92784 378 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 CRNKL1Q9BZJ0 848 aaKnown RBP14.46□□□□□ -0.1
UPF3B-204ENST00000619445 UNC93B1Q9H1C4 597 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 CABP5Q9NP86 173 aa14.46□□□□□ -0.1
UPF3B-204ENST00000619445 PAK6Q9NQU5 681 aaPredicted RBP14.46□□□□□ -0.1
UPF3B-204ENST00000619445 SAP30BPQ9UHR5 308 aaKnown RBP14.46□□□□□ -0.1
UPF3B-204ENST00000619445 MAGEB6P1A0A0J9YX57 407 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 GDF11O95390 407 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 ELNP15502 786 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 HERVK_113P62684 666 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 PDE3AQ14432 1141 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 CERKLQ49MI3 558 aaPredicted RBP14.45□□□□□ -0.1
UPF3B-204ENST00000619445 PPP4R3CPQ6ZMV5 832 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 C12orf42Q96LP6 360 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 FEZ1Q99689 392 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 ZBTB40Q9NUA8 1239 aa14.45□□□□□ -0.1
UPF3B-204ENST00000619445 GH2P01242 217 aa14.44□□□□□ -0.1
UPF3B-204ENST00000619445 TFRCP02786 760 aaKnown RBP14.44□□□□□ -0.1
UPF3B-204ENST00000619445 XRCC5P13010 732 aaKnown RBP14.44□□□□□ -0.1
UPF3B-204ENST00000619445 CCNA1P78396 465 aa14.44□□□□□ -0.1
UPF3B-204ENST00000619445 SLC9C2Q5TAH2 1124 aa14.44□□□□□ -0.1
UPF3B-204ENST00000619445 ANKLE1Q8NAG6 615 aa14.44□□□□□ -0.1
UPF3B-204ENST00000619445 NUDT12Q9BQG2 462 aa14.44□□□□□ -0.1
UPF3B-204ENST00000619445 IL1RAPL2Q9NP60 686 aa14.44□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L15C9J2P7 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L13C9JLJ4 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L11C9JVI0 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L18D6R9N7 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L22D6RA61 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L17D6RBQ6 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L19D6RCP7 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L20D6RJB6 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 H0YGN5 161 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 GLRX3O76003 335 aaKnown RBP14.43□□□□□ -0.1
UPF3B-204ENST00000619445 POLR3DP05423 398 aaPredicted RBP14.43□□□□□ -0.1
UPF3B-204ENST00000619445 USP17L24Q0WX57 530 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 ABCB5Q2M3G0 1257 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 DEFB118Q96PH6 123 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 P2RX7Q99572 595 aaKnown RBP14.43□□□□□ -0.1
UPF3B-204ENST00000619445 RIOK1Q9BRS2 568 aaKnown RBP14.43□□□□□ -0.1
UPF3B-204ENST00000619445 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.43□□□□□ -0.1
UPF3B-204ENST00000619445 KIAA1683Q9H0B3 1180 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 ANTXR1Q9H6X2 564 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 HMX1Q9NP08 348 aaPredicted RBP14.43□□□□□ -0.1
UPF3B-204ENST00000619445 RCAN3Q9UKA8 241 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 GJD2Q9UKL4 321 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 RPTORQ8N122 1335 aa14.43□□□□□ -0.1
UPF3B-204ENST00000619445 NAV1Q8NEY1 1877 aa14.42□□□□□ -0.1
UPF3B-204ENST00000619445 PDE6AP16499 860 aa14.42□□□□□ -0.1
UPF3B-204ENST00000619445 ERVK-9P63128 1117 aa14.42□□□□□ -0.1
UPF3B-204ENST00000619445 ERVK-24P63145 666 aa14.42□□□□□ -0.1
UPF3B-204ENST00000619445 CRISPLD2Q9H0B8 497 aa14.42□□□□□ -0.1
UPF3B-204ENST00000619445 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.42□□□□□ -0.1
UPF3B-204ENST00000619445 EMILIN3Q9NT22 766 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms