RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 ITPK1Q13572 414 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 WWC2Q6AWC2 1192 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 RASGRP2Q7LDG7 609 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 PPFIBP1Q86W92 1011 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 HELLSQ9NRZ9 838 aa12.28□□□□□ -0.44
UPF3A-212ENST00000619079 SIPA1L3O60292 1781 aaPredicted RBP12.27□□□□□ -0.44
UPF3A-212ENST00000619079 MAP3K15Q6ZN16 1313 aa12.27□□□□□ -0.44
UPF3A-212ENST00000619079 CCDC129Q6ZRS4 1044 aa12.27□□□□□ -0.44
UPF3A-212ENST00000619079 CCDC51Q96ER9 411 aa12.27□□□□□ -0.44
UPF3A-212ENST00000619079 SUCLG2Q96I99 432 aa12.27□□□□□ -0.44
UPF3A-212ENST00000619079 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.27□□□□□ -0.44
UPF3A-212ENST00000619079 KCPQ6ZWJ8 1503 aa12.27□□□□□ -0.45
UPF3A-212ENST00000619079 E7EWF7 191 aa12.27□□□□□ -0.45
UPF3A-212ENST00000619079 DDX58O95786 925 aaKnown RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 HMGB2P26583 209 aaKnown RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 KIF23Q02241 960 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 CT47A1Q5JQC4 288 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 RESP18Q5W5W9 173 aa12.27□□□□□ -0.45
UPF3A-212ENST00000619079 TEX13AQ9BXU3 409 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 IRX2Q9BZI1 471 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 ZNF330Q9Y3S2 320 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 NFE2L3Q9Y4A8 694 aa12.27□□□□□ -0.45
UPF3A-212ENST00000619079 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.27□□□□□ -0.45
UPF3A-212ENST00000619079 LAMA4Q16363 1823 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 KDM3BQ7LBC6 1761 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 SHTN1A0MZ66 631 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 ANKRD65E5RJM6 399 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 ANXA1P04083 346 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 TTLL5Q6EMB2 1281 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 GBP6Q6ZN66 633 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 TRIML1Q8N9V2 468 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 LINC00116Q8NCU8 138 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 BANK1Q8NDB2 785 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 FAM76AQ8TAV0 307 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 EDC3Q96F86 508 aaKnown RBP12.26□□□□□ -0.45
UPF3A-212ENST00000619079 HAUS7Q99871 368 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 A1CFQ9NQ94 594 aaKnown RBP12.26□□□□□ -0.45
UPF3A-212ENST00000619079 ATXN2Q99700 1313 aaKnown RBP12.26□□□□□ -0.45
UPF3A-212ENST00000619079 CDHR2Q9BYE9 1310 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 SOWAHDA6NJG2 315 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 A6NNZ2 444 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 SYF2O95926 243 aaKnown RBP12.26□□□□□ -0.45
UPF3A-212ENST00000619079 TRDNQ13061 729 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 NR1I3Q14994 352 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 TUBB8Q3ZCM7 444 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 NBPF14Q5TI25 921 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 METTL16Q86W50 562 aaKnown RBP12.26□□□□□ -0.45
UPF3A-212ENST00000619079 KBTBD3Q8NAB2 608 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 PCDHA5Q9Y5H7 936 aa12.26□□□□□ -0.45
UPF3A-212ENST00000619079 PAPPAQ13219 1627 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 A0A1B0GTH6 734 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 TARSL2A2RTX5 802 aaKnown RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 CPLX1O14810 134 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 HNRNPH1P31943 449 aaKnown RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 MTF1Q14872 753 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 CWF19L2Q2TBE0 894 aaKnown RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 SHC4Q6S5L8 630 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 CNGA4Q8IV77 575 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 KAZALD1Q96I82 304 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 RPGRIP1Q96KN7 1286 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 TFCP2L1Q9NZI6 479 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 DBNLQ9UJU6 430 aaKnown RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 HPCAL4Q9UM19 191 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 FAM169AQ9Y6X4 670 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 MARCKSP29966 332 aaPredicted RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 CRKLP46109 303 aaKnown RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 STIM1Q13586 685 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 TNNI3KQ59H18 835 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 RAD9BQ6WBX8 426 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 SPATS2Q86XZ4 545 aaKnown RBP12.25□□□□□ -0.45
UPF3A-212ENST00000619079 IGSF22Q8N9C0 903 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 COG1Q8WTW3 980 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 STAG1Q8WVM7 1258 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 CRACR2AQ9BSW2 395 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 STK32BQ9NY57 414 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 KCNH3Q9ULD8 1083 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 FPGT-TNNI3KV9GXZ4 949 aa12.25□□□□□ -0.45
UPF3A-212ENST00000619079 GNPATO15228 680 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 ERCC5P28715 1186 aaPredicted RBP12.24□□□□□ -0.45
UPF3A-212ENST00000619079 INPP5BP32019 993 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 PIP4K2AP48426 406 aaPredicted RBP12.24□□□□□ -0.45
UPF3A-212ENST00000619079 LIG3P49916 1009 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 PTPN21Q16825 1174 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 OTUD7BQ6GQQ9 843 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 CNPY4Q8N129 248 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 SLC35F6Q8N357 371 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 CTAGE1Q96RT6 745 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 PLEKHA4Q9H4M7 779 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 COPRSQ9NQ92 184 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.24□□□□□ -0.45
UPF3A-212ENST00000619079 MYO6Q9UM54 1294 aa12.24□□□□□ -0.45
UPF3A-212ENST00000619079 CYP19A1P11511 503 aaPredicted RBP12.23□□□□□ -0.45
UPF3A-212ENST00000619079 NT5DC1Q5TFE4 455 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 KAT2BQ92831 832 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 LY75O60449 1722 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 KIF28PB7ZC32 967 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 MFAP3LO75121 409 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 A1BGP04217 495 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 FECHP22830 423 aa12.23□□□□□ -0.45
UPF3A-212ENST00000619079 CCT5P48643 541 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms