RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 HLA-DOAP06340 250 aa16.06■□□□□ 0.16
RPS28-204ENST00000602140 DIEXFQ68CQ4 756 aaKnown RBP16.06■□□□□ 0.16
RPS28-204ENST00000602140 MAGEB6Q8N7X4 407 aa16.06■□□□□ 0.16
RPS28-204ENST00000602140 PANK1Q8TE04 598 aa16.06■□□□□ 0.16
RPS28-204ENST00000602140 DEFB118Q96PH6 123 aa16.06■□□□□ 0.16
RPS28-204ENST00000602140 CDK5RAP2Q96SN8 1893 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 FOCADQ5VW36 1801 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 USP17L10C9JJH3 530 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 FARP2O94887 1054 aaPredicted RBP16.05■□□□□ 0.16
RPS28-204ENST00000602140 FXR1P51114 621 aaKnown RBP eCLIP16.05■□□□□ 0.16
RPS28-204ENST00000602140 IRX3P78415 501 aaPredicted RBP16.05■□□□□ 0.16
RPS28-204ENST00000602140 AACSQ86V21 672 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 ERC1Q8IUD2 1116 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 HTATIP2Q9BUP3 242 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 ANTXR1Q9H6X2 564 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 GINM1Q9NU53 330 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 ZBTB21Q9ULJ3 1066 aa16.05■□□□□ 0.16
RPS28-204ENST00000602140 ZBED9Q6R2W3 1325 aa16.04■□□□□ 0.16
RPS28-204ENST00000602140 C19orf81C9J6K1 198 aa16.04■□□□□ 0.16
RPS28-204ENST00000602140 TFRCP02786 760 aaKnown RBP16.04■□□□□ 0.16
RPS28-204ENST00000602140 HOXA7P31268 230 aaPredicted RBP16.04■□□□□ 0.16
RPS28-204ENST00000602140 USP5P45974 858 aa16.04■□□□□ 0.16
RPS28-204ENST00000602140 P2RX7Q99572 595 aaKnown RBP16.04■□□□□ 0.16
RPS28-204ENST00000602140 PAK6Q9NQU5 681 aaPredicted RBP16.04■□□□□ 0.16
RPS28-204ENST00000602140 MORF4L1Q9UBU8 362 aa16.04■□□□□ 0.16
RPS28-204ENST00000602140 MAP3K12Q12852 859 aa16.03■□□□□ 0.16
RPS28-204ENST00000602140 CHRDL2Q6WN34 429 aa16.03■□□□□ 0.16
RPS28-204ENST00000602140 CERS3Q8IU89 383 aa16.03■□□□□ 0.16
RPS28-204ENST00000602140 IL1RAPL2Q9NP60 686 aa16.03■□□□□ 0.16
RPS28-204ENST00000602140 GJD2Q9UKL4 321 aa16.03■□□□□ 0.16
RPS28-204ENST00000602140 DOCK3Q8IZD9 2030 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 CEP290O15078 2479 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 PEX10O60683 326 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 GH2P01242 217 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 HMGCRP04035 888 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 HERVK_113P62684 666 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.02■□□□□ 0.16
RPS28-204ENST00000602140 TXNRD2Q9NNW7 524 aa16.02■□□□□ 0.16
RPS28-204ENST00000602140 CAPN2P17655 700 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 HSP90AB4PQ58FF6 505 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 TATDN1Q6P1N9 297 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 USP17L2Q6R6M4 530 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 GPRC5AQ8NFJ5 357 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 RHPN1Q8TCX5 695 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 CRISPLD2Q9H0B8 497 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 EMILIN3Q9NT22 766 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 SERPINB13Q9UIV8 391 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 NR2E3Q9Y5X4 410 aa16.01■□□□□ 0.15
RPS28-204ENST00000602140 APBB1O00213 710 aa16■□□□□ 0.15
RPS28-204ENST00000602140 TRIM32Q13049 653 aa16■□□□□ 0.15
RPS28-204ENST00000602140 TMED8Q6PL24 325 aaPredicted RBP16■□□□□ 0.15
RPS28-204ENST00000602140 TTC6Q86TZ1 520 aa16■□□□□ 0.15
RPS28-204ENST00000602140 EHD4Q9H223 541 aa16■□□□□ 0.15
RPS28-204ENST00000602140 RBPJLQ9UBG7 517 aa16■□□□□ 0.15
RPS28-204ENST00000602140 MYH1P12882 1939 aa16■□□□□ 0.15
RPS28-204ENST00000602140 RPTORQ8N122 1335 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 MS4A1P11836 297 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 CYP2B6P20813 491 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 TTF1Q15361 905 aaPredicted RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 ZYXQ15942 572 aaKnown RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 Q3C1V9 767 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 CERKLQ49MI3 558 aaPredicted RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 PAWRQ96IZ0 340 aaKnown RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 FEZ1Q99689 392 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 RIOK1Q9BRS2 568 aaKnown RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 PAGR1Q9BTK6 254 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 BCL11AQ9H165 835 aa15.99■□□□□ 0.15
RPS28-204ENST00000602140 HMX1Q9NP08 348 aaPredicted RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 RBM27Q9P2N5 1060 aaKnown RBP15.99■□□□□ 0.15
RPS28-204ENST00000602140 MAGEB6P1A0A0J9YX57 407 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 EVI5O60447 810 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 PLCD1P51178 756 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 ERVK-9P63128 1117 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 ERVK-24P63145 666 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 RAB3GAP1Q15042 981 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 SLC9C2Q5TAH2 1124 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 CCAR1Q8IX12 1150 aaKnown RBP15.98■□□□□ 0.15
RPS28-204ENST00000602140 RPAP2Q8IXW5 612 aaPredicted RBP15.98■□□□□ 0.15
RPS28-204ENST00000602140 CLASRPQ8N2M8 674 aaKnown RBP15.98■□□□□ 0.15
RPS28-204ENST00000602140 TRIB2Q92519 343 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 KIF1BPQ96EK5 621 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 NUDT12Q9BQG2 462 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 PORCNQ9H237 461 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 PLXNB2O15031 1838 aa15.98■□□□□ 0.15
RPS28-204ENST00000602140 RANBP2P49792 3224 aaKnown RBP15.98■□□□□ 0.15
RPS28-204ENST00000602140 POLR3DP05423 398 aaPredicted RBP15.97■□□□□ 0.15
RPS28-204ENST00000602140 PDE6AP16499 860 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 MAPK4P31152 587 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 PDE3AQ14432 1141 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 ABCB5Q2M3G0 1257 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 POTEEQ6S8J3 1075 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 NECAB2Q7Z6G3 386 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 SIRT2Q8IXJ6 389 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 DIS3LQ8TF46 1054 aaKnown RBP15.97■□□□□ 0.15
RPS28-204ENST00000602140 GTF3C2Q8WUA4 911 aaPredicted RBP15.97■□□□□ 0.15
RPS28-204ENST00000602140 SOCS4Q8WXH5 440 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 C12orf42Q96LP6 360 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 DNAJC2Q99543 621 aaKnown RBP15.97■□□□□ 0.15
RPS28-204ENST00000602140 CABP5Q9NP86 173 aa15.97■□□□□ 0.15
RPS28-204ENST00000602140 COG6Q9Y2V7 657 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms