RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PRKAB2O43741 272 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 TDO2P48775 406 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 SPP2Q13103 211 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 PABPC4Q13310 644 aaKnown RBP eCLIP23.18■■□□□ 1.3
UPF1-212ENST00000601689 TATDN1Q6P1N9 297 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 GADL1Q6ZQY3 521 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 PLEKHM2Q8IWE5 1019 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 ZNF287Q9HBT7 754 aa23.18■■□□□ 1.3
UPF1-212ENST00000601689 A0A0G2JLL6 359 aaPredicted RBP23.17■■□□□ 1.3
UPF1-212ENST00000601689 PATL2C9JE40 543 aaKnown RBP23.17■■□□□ 1.3
UPF1-212ENST00000601689 USP17L12C9JPN9 530 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 USP17L21D6R901 530 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 GDF11O95390 407 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 CRHR2Q13324 411 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 ABCB5Q2M3G0 1257 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 PRRT2Q7Z6L0 340 aaPredicted RBP23.17■■□□□ 1.3
UPF1-212ENST00000601689 FAM43AQ8N2R8 423 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 DNAJC18Q9H819 358 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 TMOD4Q9NZQ9 345 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 ZBTB21Q9ULJ3 1066 aa23.17■■□□□ 1.3
UPF1-212ENST00000601689 C19orf81C9J6K1 198 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 HIP1O00291 1037 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 PDHXO00330 501 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 CHGBP05060 677 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 ZMYM1Q5SVZ6 1142 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 ZNF296Q8WUU4 475 aaPredicted RBP23.16■■□□□ 1.3
UPF1-212ENST00000601689 ERO1AQ96HE7 468 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 PARK7Q99497 189 aaKnown RBP23.16■■□□□ 1.3
UPF1-212ENST00000601689 HELLSQ9NRZ9 838 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 PNMA3Q9UL41 463 aa23.16■■□□□ 1.3
UPF1-212ENST00000601689 MPHOSPH10O00566 681 aaKnown RBP23.15■■□□□ 1.3
UPF1-212ENST00000601689 SLC3A2P08195 630 aaKnown RBP23.15■■□□□ 1.3
UPF1-212ENST00000601689 MFAP1P55081 439 aaKnown RBP23.15■■□□□ 1.3
UPF1-212ENST00000601689 C12orf60Q5U649 245 aa23.15■■□□□ 1.3
UPF1-212ENST00000601689 PROCA1Q8NCQ7 364 aaPredicted RBP23.15■■□□□ 1.3
UPF1-212ENST00000601689 CCDC17Q96LX7 622 aa23.15■■□□□ 1.3
UPF1-212ENST00000601689 WDR18Q9BV38 432 aa23.15■■□□□ 1.3
UPF1-212ENST00000601689 SLC45A1Q9Y2W3 748 aa23.15■■□□□ 1.3
UPF1-212ENST00000601689 PHIPQ8WWQ0 1821 aa23.15■■□□□ 1.3
UPF1-212ENST00000601689 DDX60LQ5H9U9 1706 aaKnown RBP23.14■■□□□ 1.3
UPF1-212ENST00000601689 USP17L10C9JJH3 530 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 GH2P01242 217 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 SP3Q02447 781 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 KIF22Q14807 665 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 RAB3GAP1Q15042 981 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 SBK1Q52WX2 424 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 FEZ1Q99689 392 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 NAPBQ9H115 298 aa23.14■■□□□ 1.29
UPF1-212ENST00000601689 MINDY4BA8MYZ0 360 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 M0R2C6 588 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 TLR2O60603 784 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 GABPAQ06546 454 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 DGKZQ13574 1117 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 PKN2Q16513 984 aaKnown RBP23.13■■□□□ 1.29
UPF1-212ENST00000601689 MCMDC2Q4G0Z9 681 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 CTR9Q6PD62 1173 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 CTU1Q7Z7A3 348 aaKnown RBP23.13■■□□□ 1.29
UPF1-212ENST00000601689 PTPRFP10586 1907 aa23.13■■□□□ 1.29
UPF1-212ENST00000601689 GSG1L2A8MUP6 293 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 OSBPP22059 807 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 SHMT1P34896 483 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 USP14P54578 494 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 BACE1P56817 501 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 RRP1BQ14684 758 aaKnown RBP23.12■■□□□ 1.29
UPF1-212ENST00000601689 CCDC84Q86UT8 332 aaPredicted RBP23.12■■□□□ 1.29
UPF1-212ENST00000601689 MKNK2Q9HBH9 465 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.12■■□□□ 1.29
UPF1-212ENST00000601689 AGTPBP1Q9UPW5 1226 aa23.12■■□□□ 1.29
UPF1-212ENST00000601689 CYP2D6P10635 497 aa23.11■■□□□ 1.29
UPF1-212ENST00000601689 HMGCS2P54868 508 aa23.11■■□□□ 1.29
UPF1-212ENST00000601689 TMEM179Q6ZVK1 233 aa23.11■■□□□ 1.29
UPF1-212ENST00000601689 IFNL3Q8IZI9 196 aa23.11■■□□□ 1.29
UPF1-212ENST00000601689 SMCR8Q8TEV9 937 aaPredicted RBP23.11■■□□□ 1.29
UPF1-212ENST00000601689 SEC62Q99442 399 aaKnown RBP23.11■■□□□ 1.29
UPF1-212ENST00000601689 DIAPH3Q9NSV4 1193 aa23.11■■□□□ 1.29
UPF1-212ENST00000601689 CDK8P49336 464 aa23.1■■□□□ 1.29
UPF1-212ENST00000601689 MTMR2Q13614 643 aa23.1■■□□□ 1.29
UPF1-212ENST00000601689 SH3D19Q5HYK7 790 aa23.1■■□□□ 1.29
UPF1-212ENST00000601689 USP17L2Q6R6M4 530 aa23.1■■□□□ 1.29
UPF1-212ENST00000601689 C16orf86Q6ZW13 317 aa23.1■■□□□ 1.29
UPF1-212ENST00000601689 CENPQQ7L2Z9 268 aaPredicted RBP23.1■■□□□ 1.29
UPF1-212ENST00000601689 PDE4BQ07343 736 aa23.09■■□□□ 1.29
UPF1-212ENST00000601689 DYNLL2Q96FJ2 89 aa23.09■■□□□ 1.29
UPF1-212ENST00000601689 R3HDMLQ9H3Y0 253 aa23.09■■□□□ 1.29
UPF1-212ENST00000601689 SH2D4AQ9H788 454 aa23.09■■□□□ 1.29
UPF1-212ENST00000601689 SDSP20132 328 aa23.08■■□□□ 1.29
UPF1-212ENST00000601689 GPAT2Q6NUI2 795 aa23.08■■□□□ 1.29
UPF1-212ENST00000601689 ZNF444Q8N0Y2 327 aaPredicted RBP23.08■■□□□ 1.29
UPF1-212ENST00000601689 ARHGEF10LQ9HCE6 1279 aa23.08■■□□□ 1.29
UPF1-212ENST00000601689 CYP2D7A0A087X1C5 515 aa23.07■■□□□ 1.28
UPF1-212ENST00000601689 IRX3P78415 501 aaPredicted RBP23.07■■□□□ 1.28
UPF1-212ENST00000601689 MOGSQ13724 837 aa23.07■■□□□ 1.28
UPF1-212ENST00000601689 CCDC136Q96JN2 1154 aa23.07■■□□□ 1.28
UPF1-212ENST00000601689 SEPT2Q15019 361 aa23.06■■□□□ 1.28
UPF1-212ENST00000601689 TTC22Q5TAA0 569 aa23.06■■□□□ 1.28
UPF1-212ENST00000601689 SLC44A5Q8NCS7 719 aa23.06■■□□□ 1.28
UPF1-212ENST00000601689 MCOLN1Q9GZU1 580 aa23.06■■□□□ 1.28
UPF1-212ENST00000601689 EFCC1Q9HA90 598 aa23.06■■□□□ 1.28
UPF1-212ENST00000601689 TRIM17Q9Y577 477 aa23.06■■□□□ 1.28
UPF1-212ENST00000601689 NMIQ13287 307 aaPredicted RBP23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms