RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 U2AF1L4Q8WU68 220 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-223ENST00000600552 COLQQ9Y215 455 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-223ENST00000600552 SIPA1L1O43166 1804 aa21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 GCLCP48506 637 aaPredicted RBP21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 BRCA2P51587 3418 aa21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 BACE1P56817 501 aa21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 ZBED9Q6R2W3 1325 aa21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 DEFB118Q96PH6 123 aa21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 WDR18Q9BV38 432 aa21.42■■□□□ 1.02
SHKBP1-223ENST00000600552 CEP290O15078 2479 aa21.41■■□□□ 1.02
SHKBP1-223ENST00000600552 MAP3K12Q12852 859 aa21.41■■□□□ 1.02
SHKBP1-223ENST00000600552 ZYXQ15942 572 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-223ENST00000600552 P2RX7Q99572 595 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-223ENST00000600552 ZBTB21Q9ULJ3 1066 aa21.41■■□□□ 1.02
SHKBP1-223ENST00000600552 MYH1P12882 1939 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 USP17L10C9JJH3 530 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 FARP2O94887 1054 aaPredicted RBP21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 SGPL1O95470 568 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 GH2P01242 217 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 IRF5Q13568 498 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 SH3D19Q5HYK7 790 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 PXYLP1Q8TE99 480 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 LOC285556D6RIA3 1793 aa21.4■■□□□ 1.02
SHKBP1-223ENST00000600552 CCAR1Q8IX12 1150 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-223ENST00000600552 RHPN1Q8TCX5 695 aa21.39■■□□□ 1.01
SHKBP1-223ENST00000600552 DNAJC2Q99543 621 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-223ENST00000600552 PAGR1Q9BTK6 254 aa21.39■■□□□ 1.01
SHKBP1-223ENST00000600552 COG6Q9Y2V7 657 aa21.39■■□□□ 1.01
SHKBP1-223ENST00000600552 FOCADQ5VW36 1801 aa21.39■■□□□ 1.01
SHKBP1-223ENST00000600552 C19orf81C9J6K1 198 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 MS4A1P11836 297 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 CYP2B6P20813 491 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 RAB3GAP1Q15042 981 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 HSP90AB4PQ58FF6 505 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 FEZ1Q99689 392 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 HTATIP2Q9BUP3 242 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 PCDH10Q9P2E7 1040 aa21.38■■□□□ 1.01
SHKBP1-223ENST00000600552 MAGEB6P1A0A0J9YX57 407 aa21.37■■□□□ 1.01
SHKBP1-223ENST00000600552 IFIT2P09913 472 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-223ENST00000600552 HERVK_113P62684 666 aa21.37■■□□□ 1.01
SHKBP1-223ENST00000600552 CHRDL2Q6WN34 429 aa21.37■■□□□ 1.01
SHKBP1-223ENST00000600552 METTL16Q86W50 562 aaKnown RBP21.37■■□□□ 1.01
SHKBP1-223ENST00000600552 GOLIM4O00461 696 aa21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 POLR3DP05423 398 aaPredicted RBP21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 TRIM32Q13049 653 aa21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 USP17L2Q6R6M4 530 aa21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 CLASRPQ8N2M8 674 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 GPRC5AQ8NFJ5 357 aa21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 CWC22Q9HCG8 908 aaKnown RBP21.36■■□□□ 1.01
SHKBP1-223ENST00000600552 CERKLQ49MI3 558 aaPredicted RBP21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 SLC9C2Q5TAH2 1124 aa21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 TTC6Q86TZ1 520 aa21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.35■■□□□ 1.019e-6■■■■■ 32.4
SHKBP1-223ENST00000600552 TXNRD2Q9NNW7 524 aa21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 EMILIN3Q9NT22 766 aa21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 GINM1Q9NU53 330 aa21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 SERPINB13Q9UIV8 391 aa21.35■■□□□ 1.01
SHKBP1-223ENST00000600552 IGSF3O75054 1194 aa21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 HMMRO75330 724 aa21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 HOXA7P31268 230 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 TTF1Q15361 905 aaPredicted RBP21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 ABCB5Q2M3G0 1257 aa21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 CERS3Q8IU89 383 aa21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 MORF4L1Q9UBU8 362 aa21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 GJD2Q9UKL4 321 aa21.34■■□□□ 1.01
SHKBP1-223ENST00000600552 HMGCRP04035 888 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 PDE6AP16499 860 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 PLCD1P51178 756 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 Q3C1V9 767 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 UBE2Q1Q7Z7E8 422 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 KIF1BPQ96EK5 621 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 EDC3Q96F86 508 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 PAWRQ96IZ0 340 aaKnown RBP21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 CABP5Q9NP86 173 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 RBPJLQ9UBG7 517 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 DDX19BQ9UMR2 479 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 NR2E3Q9Y5X4 410 aa21.33■■□□□ 1.01
SHKBP1-223ENST00000600552 ZNF532Q9HCE3 1301 aa21.32■■□□□ 1
SHKBP1-223ENST00000600552 MPHOSPH10O00566 681 aaKnown RBP21.32■■□□□ 1
SHKBP1-223ENST00000600552 EVI5O60447 810 aa21.32■■□□□ 1
SHKBP1-223ENST00000600552 FXR1P51114 621 aaKnown RBP eCLIP21.32■■□□□ 1
SHKBP1-223ENST00000600552 PDE3AQ14432 1141 aa21.32■■□□□ 1
SHKBP1-223ENST00000600552 WDR78Q5VTH9 848 aa21.32■■□□□ 1
SHKBP1-223ENST00000600552 RPAP2Q8IXW5 612 aaPredicted RBP21.32■■□□□ 1
SHKBP1-223ENST00000600552 ACER1Q8TDN7 264 aa21.32■■□□□ 1
SHKBP1-223ENST00000600552 CRNKL1Q9BZJ0 848 aaKnown RBP21.32■■□□□ 1
SHKBP1-223ENST00000600552 PAK6Q9NQU5 681 aaPredicted RBP21.32■■□□□ 1
SHKBP1-223ENST00000600552 MCM9Q9NXL9 1143 aa21.32■■□□□ 1
SHKBP1-223ENST00000600552 TRIOBPQ9H2D6 2365 aa21.31■■□□□ 1
SHKBP1-223ENST00000600552 TATDN1Q6P1N9 297 aa21.31■■□□□ 1
SHKBP1-223ENST00000600552 SIRT2Q8IXJ6 389 aa21.31■■□□□ 1
SHKBP1-223ENST00000600552 DIS3LQ8TF46 1054 aaKnown RBP21.31■■□□□ 1
SHKBP1-223ENST00000600552 NUDT12Q9BQG2 462 aa21.31■■□□□ 1
SHKBP1-223ENST00000600552 RIOK1Q9BRS2 568 aaKnown RBP21.31■■□□□ 1
SHKBP1-223ENST00000600552 BOLA2Q9H3K6 86 aa21.31■■□□□ 1
SHKBP1-223ENST00000600552 HMX1Q9NP08 348 aaPredicted RBP21.31■■□□□ 1
SHKBP1-223ENST00000600552 ERVK-9P63128 1117 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 ERVK-24P63145 666 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 EVX2Q03828 476 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 SLFNL1Q499Z3 407 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 464 ms