RNA–Protein interactions for RNA: ENST00000600031.1

VRK3-218, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,110 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-218ENST00000600031 RXRAP19793 462 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 NASPP49321 788 aaPredicted RBP17.74■□□□□ 0.43
VRK3-218ENST00000600031 TCP10Q12799 353 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 IQCA1Q86XH1 822 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 NSUN7Q8NE18 718 aaKnown RBP17.74■□□□□ 0.43
VRK3-218ENST00000600031 MYL10Q9BUA6 226 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 CCDC69A6NI79 296 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 TSPY2A6NKD2 308 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 TFAP4Q01664 338 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 TTC6Q86TZ1 520 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 SMARCC2Q8TAQ2 1214 aa17.74■□□□□ 0.43
VRK3-218ENST00000600031 LLPHQ9BRT6 129 aaKnown RBP17.74■□□□□ 0.43
VRK3-218ENST00000600031 SHTN1A0MZ66 631 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 RASA1P20936 1047 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 SYT1P21579 422 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 GABPAQ06546 454 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 DLGAP5Q15398 846 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 MICU3Q86XE3 530 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 ZNF444Q8N0Y2 327 aaPredicted RBP17.73■□□□□ 0.43
VRK3-218ENST00000600031 TMTC2Q8N394 836 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 SLC12A7Q9Y666 1083 aa17.73■□□□□ 0.43
VRK3-218ENST00000600031 ZBTB43O43298 467 aa17.72■□□□□ 0.43
VRK3-218ENST00000600031 BRD1O95696 1058 aa17.72■□□□□ 0.43
VRK3-218ENST00000600031 FOXD4L5Q5VV16 416 aaPredicted RBP17.72■□□□□ 0.43
VRK3-218ENST00000600031 FOXD4L4Q8WXT5 416 aaPredicted RBP17.72■□□□□ 0.43
VRK3-218ENST00000600031 DDX11Q96FC9 970 aa17.72■□□□□ 0.43
VRK3-218ENST00000600031 PPFIA3O75145 1194 aa17.72■□□□□ 0.43
VRK3-218ENST00000600031 NPM3O75607 178 aaKnown RBP17.72■□□□□ 0.43
VRK3-218ENST00000600031 METAP2P50579 478 aaKnown RBP eCLIP17.72■□□□□ 0.43
VRK3-218ENST00000600031 EIF6P56537 245 aaKnown RBP17.72■□□□□ 0.43
VRK3-218ENST00000600031 CCDC144CPQ8IYA2 1237 aa17.72■□□□□ 0.43
VRK3-218ENST00000600031 ZNF287Q9HBT7 754 aa17.72■□□□□ 0.43
VRK3-218ENST00000600031 PTPDC1A2A3K4 754 aa17.71■□□□□ 0.43
VRK3-218ENST00000600031 CDC27P30260 824 aa17.71■□□□□ 0.43
VRK3-218ENST00000600031 ADD1P35611 737 aaKnown RBP17.71■□□□□ 0.43
VRK3-218ENST00000600031 NT5C2P49902 561 aa17.71■□□□□ 0.43
VRK3-218ENST00000600031 IFIT1BQ5T764 474 aaKnown RBP17.71■□□□□ 0.43
VRK3-218ENST00000600031 SH3BP5LQ7L8J4 393 aa17.71■□□□□ 0.43
VRK3-218ENST00000600031 MTMR14Q8NCE2 650 aa17.71■□□□□ 0.43
VRK3-218ENST00000600031 IL17RBQ9NRM6 502 aa17.71■□□□□ 0.43
VRK3-218ENST00000600031 CLRN2A0PK11 232 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 DDTLA6NHG4 134 aaPredicted RBP17.71■□□□□ 0.42
VRK3-218ENST00000600031 STX6O43752 255 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 SLURP2P0DP57 97 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 NCLP19338 710 aaKnown RBP17.71■□□□□ 0.42
VRK3-218ENST00000600031 ZSCAN23Q3MJ62 389 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 CAVIN1Q6NZI2 390 aaKnown RBP17.71■□□□□ 0.42
VRK3-218ENST00000600031 SYNE3Q6ZMZ3 975 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 ZNF654Q8IZM8 581 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 FAM217BQ9NTX9 383 aaPredicted RBP17.71■□□□□ 0.42
VRK3-218ENST00000600031 SERPINB13Q9UIV8 391 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 GJA3Q9Y6H8 435 aa17.71■□□□□ 0.42
VRK3-218ENST00000600031 ZNF541Q9H0D2 1346 aa17.7■□□□□ 0.42
VRK3-218ENST00000600031 GOLGA8AA7E2F4 631 aa17.7■□□□□ 0.42
VRK3-218ENST00000600031 TSPY3P0CV98 308 aa17.7■□□□□ 0.42
VRK3-218ENST00000600031 TSPY8P0CW00 308 aa17.7■□□□□ 0.42
VRK3-218ENST00000600031 YBX3P16989 372 aaKnown RBP eCLIP17.7■□□□□ 0.42
VRK3-218ENST00000600031 CHMP4CQ96CF2 233 aa17.7■□□□□ 0.42
VRK3-218ENST00000600031 ZNF70Q9UC06 446 aaPredicted RBP17.7■□□□□ 0.42
VRK3-218ENST00000600031 DHX16O60231 1041 aaKnown RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 PRPF40AO75400 957 aaKnown RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 HLA-DOAP06340 250 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 LMNB1P20700 586 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 RPS12P25398 132 aaKnown RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 GMPSP49915 693 aaPredicted RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 LARP1BQ659C4 914 aaKnown RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 RCSD1Q6JBY9 416 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 ZBED3Q96IU2 234 aaPredicted RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 DHX36Q9H2U1 1008 aaKnown RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 MYOZ2Q9NPC6 264 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 WDR33Q9C0J8 1336 aaKnown RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 ENTPD3O75355 529 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 ZSCAN29Q8IWY8 852 aaPredicted RBP17.69■□□□□ 0.42
VRK3-218ENST00000600031 MTMR6Q9Y217 621 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 SBF1O95248 1867 aa17.69■□□□□ 0.42
VRK3-218ENST00000600031 TCP10L2B9ZVM9 353 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 CPLX1O14810 134 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 FDPSP14324 419 aaKnown RBP17.68■□□□□ 0.42
VRK3-218ENST00000600031 ZNF280AP59817 542 aaPredicted RBP17.68■□□□□ 0.42
VRK3-218ENST00000600031 HMGN5P82970 282 aaKnown RBP17.68■□□□□ 0.42
VRK3-218ENST00000600031 SPDYE2Q495Y8 402 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 NUP133Q8WUM0 1156 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 EHD4Q9H223 541 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 TCP11L1Q9NUJ3 509 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 NID2Q14112 1375 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 SIPA1L1O43166 1804 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 DICER1Q9UPY3 1922 aaKnown RBP17.68■□□□□ 0.42
VRK3-218ENST00000600031 WNT10BO00744 389 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 MBD3O95983 291 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 EGFRP00533 1210 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 SHMT1P34896 483 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 NBPF9Q3BBW0 867 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 NEDD1Q8NHV4 660 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 TMOD2Q9NZR1 351 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 PI4KBQ9UBF8 816 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 SWAP70Q9UH65 585 aa17.68■□□□□ 0.42
VRK3-218ENST00000600031 ZSCAN22P10073 491 aaPredicted RBP17.67■□□□□ 0.42
VRK3-218ENST00000600031 PDCP20941 246 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 NTRK3Q16288 839 aa17.67■□□□□ 0.42
VRK3-218ENST00000600031 CATIPQ7Z7H3 387 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms