RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 CCL5P13501 91 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 FLT3LGP49771 235 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 BACE1P56817 501 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 IRX3P78415 501 aaPredicted RBP11.91□□□□□ -0.5
VRK3-216ENST00000599342 METTL16Q86W50 562 aaKnown RBP11.91□□□□□ -0.5
VRK3-216ENST00000599342 WDR18Q9BV38 432 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 RNF208Q9H0X6 261 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 ASCC2Q9H1I8 757 aaPredicted RBP11.91□□□□□ -0.5
VRK3-216ENST00000599342 RCAN3Q9UKA8 241 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 TAOK2Q9UL54 1235 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 ZBTB21Q9ULJ3 1066 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 MGAMO43451 1857 aa11.91□□□□□ -0.5
VRK3-216ENST00000599342 C19orf81C9J6K1 198 aa11.9□□□□□ -0.5
VRK3-216ENST00000599342 USP17L10C9JJH3 530 aa11.9□□□□□ -0.5
VRK3-216ENST00000599342 RAB11FIP3O75154 756 aa11.9□□□□□ -0.5
VRK3-216ENST00000599342 CDK5RAP2Q96SN8 1893 aa11.9□□□□□ -0.5
VRK3-216ENST00000599342 DNAJC2Q99543 621 aaKnown RBP11.9□□□□□ -0.5
VRK3-216ENST00000599342 ZBTB40Q9NUA8 1239 aa11.9□□□□□ -0.5
VRK3-216ENST00000599342 MYO5AQ9Y4I1 1855 aaKnown RBP11.9□□□□□ -0.5
VRK3-216ENST00000599342 MAGEB6P1A0A0J9YX57 407 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 GJB1P08034 283 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 GJA8P48165 433 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 IRF5Q13568 498 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 TTC6Q86TZ1 520 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 PXYLP1Q8TE99 480 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.89□□□□□ -0.51
VRK3-216ENST00000599342 SHISA4Q96DD7 197 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 FEZ1Q99689 392 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 EHD4Q9H223 541 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 SERPINB13Q9UIV8 391 aa11.89□□□□□ -0.51
VRK3-216ENST00000599342 KIAA0100Q14667 2235 aaKnown RBP11.88□□□□□ -0.51
VRK3-216ENST00000599342 GOLIM4O00461 696 aa11.88□□□□□ -0.51
VRK3-216ENST00000599342 GH2P01242 217 aa11.88□□□□□ -0.51
VRK3-216ENST00000599342 INHAP05111 366 aa11.88□□□□□ -0.51
VRK3-216ENST00000599342 POLR3DP05423 398 aaPredicted RBP11.88□□□□□ -0.51
VRK3-216ENST00000599342 ELNP15502 786 aa11.88□□□□□ -0.51
VRK3-216ENST00000599342 JAG1P78504 1218 aa11.88□□□□□ -0.51
VRK3-216ENST00000599342 SHROOM1Q2M3G4 852 aaPredicted RBP11.88□□□□□ -0.51
VRK3-216ENST00000599342 SLC9C2Q5TAH2 1124 aa11.88□□□□□ -0.51
VRK3-216ENST00000599342 CRNKL1Q9BZJ0 848 aaKnown RBP11.88□□□□□ -0.51
VRK3-216ENST00000599342 PDE6AP16499 860 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 HOXA7P31268 230 aaPredicted RBP11.87□□□□□ -0.51
VRK3-216ENST00000599342 RAB3GAP1Q15042 981 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 CERKLQ49MI3 558 aaPredicted RBP11.87□□□□□ -0.51
VRK3-216ENST00000599342 TATDN1Q6P1N9 297 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 USP17L2Q6R6M4 530 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 CCAR1Q8IX12 1150 aaKnown RBP11.87□□□□□ -0.51
VRK3-216ENST00000599342 SIRT2Q8IXJ6 389 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 U2AF1L4Q8WU68 220 aaKnown RBP11.87□□□□□ -0.51
VRK3-216ENST00000599342 GTF3C2Q8WUA4 911 aaPredicted RBP11.87□□□□□ -0.51
VRK3-216ENST00000599342 RIOK1Q9BRS2 568 aaKnown RBP11.87□□□□□ -0.51
VRK3-216ENST00000599342 UNC93B1Q9H1C4 597 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 CABP5Q9NP86 173 aa11.87□□□□□ -0.51
VRK3-216ENST00000599342 ZNF532Q9HCE3 1301 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 MYH1P12882 1939 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 USP14P54578 494 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 HERVK_113P62684 666 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 ZYXQ15942 572 aaKnown RBP11.86□□□□□ -0.51
VRK3-216ENST00000599342 ABCB5Q2M3G0 1257 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 GPRC5AQ8NFJ5 357 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 DPF3Q92784 378 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 HTATIP2Q9BUP3 242 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.86□□□□□ -0.512e-7■■■□□ 18.9
VRK3-216ENST00000599342 BOLA2Q9H3K6 86 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 PAG1Q9NWQ8 432 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 MCM9Q9NXL9 1143 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 MORF4L1Q9UBU8 362 aa11.86□□□□□ -0.51
VRK3-216ENST00000599342 NAV1Q8NEY1 1877 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 FARP2O94887 1054 aaPredicted RBP11.85□□□□□ -0.51
VRK3-216ENST00000599342 SGPL1O95470 568 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 HMGCRP04035 888 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 CAPN2P17655 700 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 PLCD1P51178 756 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 PDE3AQ14432 1141 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 SOCS4Q8WXH5 440 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 DEFB118Q96PH6 123 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 P2RX7Q99572 595 aaKnown RBP11.85□□□□□ -0.51
VRK3-216ENST00000599342 PAGR1Q9BTK6 254 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 LRRCC1Q9C099 1032 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 CWC22Q9HCG8 908 aaKnown RBP11.85□□□□□ -0.51
VRK3-216ENST00000599342 EMILIN3Q9NT22 766 aa11.85□□□□□ -0.51
VRK3-216ENST00000599342 DDX60LQ5H9U9 1706 aaKnown RBP11.84□□□□□ -0.51
VRK3-216ENST00000599342 TCRBV5S4A2TA0A5A2 114 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 MPHOSPH10O00566 681 aaKnown RBP11.84□□□□□ -0.51
VRK3-216ENST00000599342 TFRCP02786 760 aaKnown RBP11.84□□□□□ -0.51
VRK3-216ENST00000599342 ATP5JP18859 108 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 MAPK4P31152 587 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 SHMT1P34896 483 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 ERVK-9P63128 1117 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 ERVK-24P63145 666 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 HABP4Q5JVS0 413 aaKnown RBP11.84□□□□□ -0.51
VRK3-216ENST00000599342 AMOTL1Q8IY63 956 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 LCORLQ8N3X6 602 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 SDR42E1Q8WUS8 393 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 EDC3Q96F86 508 aaKnown RBP11.84□□□□□ -0.51
VRK3-216ENST00000599342 C12orf42Q96LP6 360 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 NUDT12Q9BQG2 462 aa11.84□□□□□ -0.51
VRK3-216ENST00000599342 PAK6Q9NQU5 681 aaPredicted RBP11.84□□□□□ -0.51
VRK3-216ENST00000599342 USP17L15C9J2P7 530 aa11.83□□□□□ -0.52
VRK3-216ENST00000599342 USP17L13C9JLJ4 530 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms