RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 DCP1AQ9NPI6 582 aaPredicted RBP14.72□□□□□ -0.05
LIG1-217ENST00000599165 AGTPBP1Q9UPW5 1226 aa14.72□□□□□ -0.05
LIG1-217ENST00000599165 SLC45A1Q9Y2W3 748 aa14.72□□□□□ -0.05
LIG1-217ENST00000599165 USP17L5A8MUK1 530 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 MBD4O95243 580 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 HLA-DOAP06340 250 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 HMGCS2P54868 508 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 UBE3CQ15386 1083 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 PARK7Q99497 189 aaKnown RBP14.71□□□□□ -0.05
LIG1-217ENST00000599165 PUS7LQ9H0K6 701 aaKnown RBP14.71□□□□□ -0.05
LIG1-217ENST00000599165 SERPINB13Q9UIV8 391 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 PTCH2Q9Y6C5 1203 aa14.71□□□□□ -0.05
LIG1-217ENST00000599165 PDE4DIPQ5VU43 2346 aa14.7□□□□□ -0.06
LIG1-217ENST00000599165 ASNSP08243 561 aa14.7□□□□□ -0.06
LIG1-217ENST00000599165 GUCY1A2P33402 732 aa14.7□□□□□ -0.06
LIG1-217ENST00000599165 HDAC1Q13547 482 aaPredicted RBP14.7□□□□□ -0.06
LIG1-217ENST00000599165 CRACR2BQ8N4Y2 399 aaPredicted RBP14.7□□□□□ -0.06
LIG1-217ENST00000599165 PROCA1Q8NCQ7 364 aaPredicted RBP14.7□□□□□ -0.06
LIG1-217ENST00000599165 TRIM47Q96LD4 638 aa14.7□□□□□ -0.06
LIG1-217ENST00000599165 CRNKL1Q9BZJ0 848 aaKnown RBP14.7□□□□□ -0.06
LIG1-217ENST00000599165 ECM2O94769 699 aaPredicted RBP14.69□□□□□ -0.06
LIG1-217ENST00000599165 GH2P01242 217 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 BACE1P56817 501 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 MTMR2Q13614 643 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 POTEEQ6S8J3 1075 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 KBTBD3Q8NAB2 608 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 SLC44A5Q8NCS7 719 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 ARMC5Q96C12 935 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 TBC1D2Q9BYX2 928 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 GINM1Q9NU53 330 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 TNRC18O15417 2968 aaPredicted RBP14.69□□□□□ -0.06
LIG1-217ENST00000599165 PLXNB2O15031 1838 aa14.69□□□□□ -0.06
LIG1-217ENST00000599165 CYP2D7A0A087X1C5 515 aa14.68□□□□□ -0.06
LIG1-217ENST00000599165 TTC6Q86TZ1 520 aa14.68□□□□□ -0.06
LIG1-217ENST00000599165 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.68□□□□□ -0.065e-7■■■□□ 18.8
LIG1-217ENST00000599165 MCM9Q9NXL9 1143 aa14.68□□□□□ -0.06
LIG1-217ENST00000599165 GREB1LQ9C091 1923 aaPredicted RBP14.68□□□□□ -0.06
LIG1-217ENST00000599165 TTC41PQ6P2S7 1318 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 RLFQ13129 1914 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 OSBPP22059 807 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 PSMC4P43686 418 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 EXOC6Q8TAG9 804 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 OSBP2Q969R2 916 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 DYNLL2Q96FJ2 89 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 ASCC2Q9H1I8 757 aaPredicted RBP14.67□□□□□ -0.06
LIG1-217ENST00000599165 AS3MTQ9HBK9 375 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 EMILIN3Q9NT22 766 aa14.67□□□□□ -0.06
LIG1-217ENST00000599165 POTEFA5A3E0 1075 aa14.66□□□□□ -0.06
LIG1-217ENST00000599165 PEX10O60683 326 aa14.66□□□□□ -0.06
LIG1-217ENST00000599165 POLR3DP05423 398 aaPredicted RBP14.66□□□□□ -0.06
LIG1-217ENST00000599165 CERKLQ49MI3 558 aaPredicted RBP14.66□□□□□ -0.06
LIG1-217ENST00000599165 ACER1Q8TDN7 264 aa14.66□□□□□ -0.06
LIG1-217ENST00000599165 ZNF333Q96JL9 665 aa14.66□□□□□ -0.06
LIG1-217ENST00000599165 STRBPQ96SI9 672 aaKnown RBP14.66□□□□□ -0.06
LIG1-217ENST00000599165 TRIM34Q9BYJ4 488 aa14.66□□□□□ -0.06
LIG1-217ENST00000599165 PARP14Q460N5 1801 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 USP17L10C9JJH3 530 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 M0R2C6 588 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 IGHDP01880 384 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 MX1P20591 662 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 HOXA7P31268 230 aaPredicted RBP14.65□□□□□ -0.06
LIG1-217ENST00000599165 MLLT1Q03111 559 aaPredicted RBP14.65□□□□□ -0.06
LIG1-217ENST00000599165 ABCB5Q2M3G0 1257 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 C12orf60Q5U649 245 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 ANKRD13CQ8N6S4 541 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 ATP8A2Q9NTI2 1148 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 SRRDQ9UH36 339 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 GABRQQ9UN88 632 aa14.65□□□□□ -0.06
LIG1-217ENST00000599165 MKI67P46013 3256 aaKnown RBP14.65□□□□□ -0.06
LIG1-217ENST00000599165 A0A1W2PRG0 241 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 GSG1L2A8MUP6 293 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 C19orf81C9J6K1 198 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 USP17L12C9JPN9 530 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 USP17L21D6R901 530 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 RNF113AO15541 343 aaKnown RBP14.64□□□□□ -0.07
LIG1-217ENST00000599165 GNRH1P01148 92 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 PRKCZQ05513 592 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 SEPT2Q15019 361 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 FAM110CQ1W6H9 321 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 ANKRD45Q5TZF3 282 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 CTR9Q6PD62 1173 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 SIAH1Q8IUQ4 282 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 SMC5Q8IY18 1101 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 SMCR8Q8TEV9 937 aaPredicted RBP14.64□□□□□ -0.07
LIG1-217ENST00000599165 SH3TC2Q8TF17 1288 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 APPBP2Q92624 585 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 GPATCH3Q96I76 525 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 C12orf42Q96LP6 360 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 SEC62Q99442 399 aaKnown RBP14.64□□□□□ -0.07
LIG1-217ENST00000599165 EPB41L4AQ9HCS5 686 aaPredicted RBP14.64□□□□□ -0.07
LIG1-217ENST00000599165 TXNRD2Q9NNW7 524 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 STAP2Q9UGK3 403 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 SLC4A4Q9Y6R1 1079 aa14.64□□□□□ -0.07
LIG1-217ENST00000599165 GLRX3O76003 335 aaKnown RBP14.63□□□□□ -0.07
LIG1-217ENST00000599165 AKR1B1P15121 316 aa14.63□□□□□ -0.07
LIG1-217ENST00000599165 KIF22Q14807 665 aa14.63□□□□□ -0.07
LIG1-217ENST00000599165 RAB3GAP1Q15042 981 aa14.63□□□□□ -0.07
LIG1-217ENST00000599165 ZSCAN25Q6NSZ9 544 aa14.63□□□□□ -0.07
LIG1-217ENST00000599165 CLEC10AQ8IUN9 316 aa14.63□□□□□ -0.07
LIG1-217ENST00000599165 GCC1Q96CN9 775 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms